View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_18 (Length: 366)
Name: NF8556_low_18
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 41622940 - 41623269
Alignment:
| Q |
16 |
agagagaccaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622940 |
agagagaccaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagta |
41623039 |
T |
|
| Q |
116 |
tgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623040 |
tgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccac |
41623139 |
T |
|
| Q |
216 |
cagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgttacgatgaccggtcagatgatgcatgatttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623140 |
cagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgttacgatgaccggtcagatgatgcatgatttg |
41623239 |
T |
|
| Q |
316 |
aacctcgcggcgaacatcatcgatatcgtc |
345 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
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|
| T |
41623240 |
aacctcgcggcggacatcatcgatatcgtc |
41623269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 39940237 - 39940194
Alignment:
| Q |
193 |
aatccgatcaaaaagttcaccaccagcacaaagctccataacaa |
236 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
39940237 |
aatcctatcaaaaagttcaccaccttcacaaagctccataacaa |
39940194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 2478974 - 2478662
Alignment:
| Q |
17 |
gagagaccaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagtat |
116 |
Q |
| |
|
|||||||||||||| || || || || |||||||| || | |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
2478974 |
gagagaccaaaatctgtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaaatccctatgcataacacccatagtat |
2478875 |
T |
|
| Q |
117 |
gacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccacc |
216 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || | ||| |||||||||||||||||||| |||||| ||||||| ||||||||| |||||||| |
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| T |
2478874 |
gacaattatgaacaacagtgacaatctggcgacacagctcagccgcagcacgttcagagtaatgacctttggatataatcctatcaaaaagctcaccacc |
2478775 |
T |
|
| Q |
217 |
agcacaaagctccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgttacgatgaccggtcagatgatgcatgatttga |
316 |
Q |
| |
|
||||||||||||||| | ||| ||||| || || |||||||||||||||||| || ||||||||||| || |||||||| |||||||||||||| ||| |
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|
| T |
2478774 |
agcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaagctcaacaatgttccggtgaccggtgagatgatgcatgatctga |
2478675 |
T |
|
| Q |
317 |
acctcgcggcgaa |
329 |
Q |
| |
|
|| || ||||||| |
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|
| T |
2478674 |
acttcacggcgaa |
2478662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 40532210 - 40532008
Alignment:
| Q |
68 |
aacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcac |
167 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| || |||||| ||||||| |||||||||| ||||||| || | ||||| ||| ||||| | |
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|
| T |
40532210 |
aacaagaaattttctggtttcaaatctctatgcatcacacccataaaatgacaaatatgaacaacattaacaatttgtctacaaattgaagctgcagctc |
40532111 |
T |
|
| Q |
168 |
gttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacc |
267 |
Q |
| |
|
|||| || | ||| || |||||||| |||||||||||||||||||||||||| ||||| |||| | ||| || | |||||||||||||||||| |
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|
| T |
40532110 |
tttcactatactttcccttagcaataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacc |
40532011 |
T |
|
| Q |
268 |
ttt |
270 |
Q |
| |
|
||| |
|
|
| T |
40532010 |
ttt |
40532008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 321
Target Start/End: Original strand, 38810328 - 38810452
Alignment:
| Q |
197 |
cgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgttacgatgaccgg |
296 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| | | |||||| |||||||| ||| ||||||| | ||||| ||||| ||| | || || | |
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|
| T |
38810328 |
cgatcgaaaagttcaccaccagcacacaactccataaccaaatgaacagattgtttatcttcaaaagcaccaataagttccacaatattaggctgtcctg |
38810427 |
T |
|
| Q |
297 |
tcagatgatgcatgatttgaacctc |
321 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
38810428 |
taaggtgatgcatgatttgaacctc |
38810452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 40537053 - 40536973
Alignment:
| Q |
190 |
aataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
270 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||||||| | ||| || | || |||||||||||||||||| |
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|
| T |
40537053 |
aataatcgtatcataaagttcaccaccagcacaaagttccataacaacatgaactgaattttcatcctcataagcaccttt |
40536973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 20501576 - 20501316
Alignment:
| Q |
22 |
accaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaa |
121 |
Q |
| |
|
||||||||| || ||||| ||| | | |||||| ||||||| | |||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
20501576 |
accaaaatcagtagccttaagaagtgcattttcatctttactagccaacaagaaattctctggtttcagatccctatgcataactcccataaaatgacaa |
20501477 |
T |
|
| Q |
122 |
ttatgaacaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcac |
221 |
Q |
| |
|
||| |||||| |||||||||| | ||||| | ||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||||||| |
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|
| T |
20501476 |
atattaacaacattaacaatctgtctacaaatagaagcagcagctttttcactataatgtcctttagcaatgatcctatcaaaaagttcaccaccagcac |
20501377 |
T |
|
| Q |
222 |
aaagctccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaat |
282 |
Q |
| |
|
|||| |||||||||| | ||| || | ||||||||||||| ||||| | ||||||||| |
|
|
| T |
20501376 |
aaagttccataacaacatgaactgaattcctatcctcataagctcctttaaattcaacaat |
20501316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 36384238 - 36384318
Alignment:
| Q |
157 |
agcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaag |
237 |
Q |
| |
|
||||||||||||||||| ||||||||| | || ||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
36384238 |
agcagcagcacgttcagtataatgtcctctagcaacaatccgatcaaaaagctcaccaccttcacaaagctccataacaag |
36384318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 21389969 - 21390013
Alignment:
| Q |
193 |
aatccgatcaaaaagttcaccaccagcacaaagctccataacaag |
237 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21389969 |
aatccgatcaaaaagctcaccaccttcacaaagctccataacaag |
21390013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 55168199 - 55168119
Alignment:
| Q |
190 |
aataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
270 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| ||||| ||||| | |||||| | |||||||| |||||||||| |
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|
| T |
55168199 |
aataatcctatcaaacaactcaccaccagcacaaagttccatcacaagatgcacagagaatctatcctcaaaagcaccttt |
55168119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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