View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_22 (Length: 342)

Name: NF8556_low_22
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_22
NF8556_low_22
[»] chr1 (6 HSPs)
chr1 (76-324)||(4411174-4411425)
chr1 (1-84)||(4411655-4411738)
chr1 (129-200)||(4327574-4327645)
chr1 (124-216)||(48635169-48635260)
chr1 (143-218)||(42423183-42423258)
chr1 (166-224)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (143-211)||(35775218-35775286)
chr8 (127-218)||(8252812-8252903)
chr8 (143-215)||(7624591-7624663)
[»] chr2 (6 HSPs)
chr2 (115-224)||(4908798-4908907)
chr2 (124-218)||(4119404-4119498)
chr2 (124-218)||(11510968-11511061)
chr2 (164-222)||(6989789-6989847)
chr2 (111-201)||(28206708-28206798)
chr2 (177-218)||(6767689-6767730)
[»] chr4 (5 HSPs)
chr4 (174-218)||(51093272-51093316)
chr4 (165-216)||(19067434-19067485)
chr4 (149-215)||(22887822-22887888)
chr4 (149-215)||(22939486-22939552)
chr4 (124-218)||(41058935-41059029)
[»] chr7 (1 HSPs)
chr7 (124-218)||(21435975-21436070)
[»] chr3 (9 HSPs)
chr3 (125-216)||(35951047-35951138)
chr3 (127-202)||(40339257-40339331)
chr3 (126-224)||(30958044-30958142)
chr3 (126-224)||(30973856-30973954)
chr3 (124-214)||(51667153-51667243)
chr3 (166-206)||(42534464-42534504)
chr3 (146-193)||(44375518-44375564)
chr3 (175-216)||(23187691-23187732)
chr3 (166-218)||(4194008-4194060)
[»] chr6 (3 HSPs)
chr6 (127-195)||(26492568-26492636)
chr6 (111-202)||(25208656-25208747)
chr6 (173-206)||(7263099-7263132)
[»] chr5 (3 HSPs)
chr5 (164-218)||(10859855-10859909)
chr5 (166-218)||(10860373-10860425)
chr5 (174-218)||(18977376-18977420)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 76 - 324
Target Start/End: Complemental strand, 4411425 - 4411174
Alignment:
Q  76 acaaaacttaattttgattttcttcctaagagggtgttgcatgtaatttgattt-atgtttcgatagattc--atgtaaaagttgattgagcaataaatt 172  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  4411425 acaaaaattaattttgattttctgcctaagagggtgttgcatgtaatttgattttatgtttcgatagattctcatgtaaaagttgattgagcaataaatt 4411326  T
Q  173 caaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacac 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411325 caaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacac 4411226  T
Q  273 atcagaaatcaattttttccatgttcaagagtgaaaccagcagacatatact 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411225 atcagaaatcaattttttccatgttcaagagtgaaaccagcagacatatact 4411174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4411738 - 4411655
Alignment:
Q  1 tgtgaatctcatccaaacattgactatattgactgtccacctgagtaaaataaaaactactatcagcattctcgaacaaaactt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4411738 tgtgaatctcatccaaacattgactatattgactgtccacctgagtaaaataaagactactatcagcattctcgaacaaaactt 4411655  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 4327574 - 4327645
Alignment:
Q  129 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaa 200  Q
    |||||||  ||| |||||||||| ||| | |||| |||||||||||||| ||||||||||||||||||||||    
T  4327574 tatgtttgaatatattcatgtaatagtggcttgaacaataaattcaaggataaaaatcaattgtagaggcaa 4327645  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 48635169 - 48635260
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 216  Q
    |||||||||||| |||| ||||||||||| || | || | | |||||||||| | |||||||||||| ||||| ||||||||  |||||||||    
T  48635169 tgatttatgtttggatacattcatgtaaa-gtgggtttaacgataaattcaatggtaaaaatcaattatagagacaaaagcttcaaattctag 48635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 42423183 - 42423258
Alignment:
Q  143 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||| |||||||| | |||| |||||||||  | ||||||| |||||| ||||| ||||||||| |||||||||||    
T  42423183 ttcacgtaaaagtgggttgaccaataaatttgaagctaaaattcaattttagagacaaaagctctaaattctagct 42423258  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 441649 - 441707
Alignment:
Q  166 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 224  Q
    ||||||||||| |||||||||||||||||| || ||| ||  ||||||||||| |||||    
T  441649 ataaattcaagtctaaaaatcaattgtagaagccaaaactataaattctagctttaagt 441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 35775286 - 35775218
Alignment:
Q  143 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaat 211  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  35775286 ttcatgtaaaagtggattgaacaatgaattcaaggctaaaaatcaattgtagagacaaaagctccaaat 35775218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 8252903 - 8252812
Alignment:
Q  127 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    ||||||||| |||| || ||||||||||| | |||| || |||||||||||| ||| ||||| || ||||||||| |||| ||||| |||||    
T  8252903 tttatgtttagatacatgcatgtaaaagtgggttgaacagtaaattcaaggcaaaacatcaaatgaagaggcaaacgctccaaattgtagct 8252812  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 7624591 - 7624663
Alignment:
Q  143 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 215  Q
    |||| ||||||||  ||||| |||||| |||||||| |||| |||||||||||| ||||||||| || |||||    
T  7624591 ttcaagtaaaagtaaattgaacaataatttcaaggccaaaagtcaattgtagagccaaaagctccaacttcta 7624663  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 4908907 - 4908798
Alignment:
Q  115 catgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattct 214  Q
    |||||||  |||||||||||| |||| |||||||| ||||| |||||| ||||||| | |||||| ||||||||||||||| || ||| ||  ||||| |    
T  4908907 catgtaaagtgatttatgtttggatacattcatgttaaagtggattgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaatttt 4908808  T
Q  215 agctctaagt 224  Q
    |||| |||||    
T  4908807 agctttaagt 4908798  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 4119404 - 4119498
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    ||||||||||||  ||| ||||||||||  ||  ||||| ||||| ||||| |||||||| |||||| ||| ||||||||||  |||||||||||    
T  4119404 tgatttatgtttgaatacattcatgtaagcgtgaattgatcaatacattcatggctaaaagtcaattatagcggcaaaagcttcaaattctagct 4119498  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 11511061 - 11510968
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||||||||||| | || |||||| ||||||| | |||| |||||||||  ||| ||||| | |||||||||||||||| ||| |||||||||||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgaggttaaaa-taaattgtagaggcaaaaactccaaattctagct 11510968  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 6989789 - 6989847
Alignment:
Q  164 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaa 222  Q
    |||||||||||||  | |||||||||||||||| ||||| | | |||||||||||||||    
T  6989789 caataaattcaagattgaaaatcaattgtagagtcaaaaacactaaattctagctctaa 6989847  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 28206798 - 28206708
Alignment:
Q  111 gttgcatgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaa 201  Q
    |||| |||||| || |||||||||| | || |||||||||||||||  ||||  ||||||||  || |||||||||||| ||| |||||||    
T  28206798 gttgaatgtaaattaatttatgtttaggtacattcatgtaaaagtttgttgaataataaatttgagactaaaaatcaatggtataggcaaa 28206708  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6767730 - 6767689
Alignment:
Q  177 gctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    ||||||| ||||||||||| |||||||||| |||||||||||    
T  6767730 gctaaaattcaattgtagaagcaaaagctccaaattctagct 6767689  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 51093316 - 51093272
Alignment:
Q  174 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  51093316 aaggctaaaaatcaattgtagaggcaaaagctccaaattctagct 51093272  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 19067485 - 19067434
Alignment:
Q  165 aataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 216  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  |||||||||    
T  19067485 aataaattcgaggctaataatcaattgtagagacaaaagcttcaaattctag 19067434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 22887822 - 22887888
Alignment:
Q  149 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 215  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22887822 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22887888  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 22939486 - 22939552
Alignment:
Q  149 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 215  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22939486 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22939552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 41059029 - 41058935
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||||||||||  |||| ||| || ||||||| | |||| |||| |||| || | ||||| |||||||||||||||||| ||| ||||| |||||    
T  41059029 tgatttatgttcagatacatttatataaaagtgggttgaacaatcaatttaaagttaaaagtcaattgtagaggcaaaaactcgaaattttagct 41058935  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 21435975 - 21436070
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagct-caaaattctagct 218  Q
    |||||||||||| |||   |||||| |||||| |||||| |||||| |||||  |||||| ||||| ||||||||||||||| |||||||||||||    
T  21435975 tgatttatgtttggatgccttcatggaaaagtggattgaacaataacttcaaacctaaaattcaatggtagaggcaaaagctccaaaattctagct 21436070  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 35951138 - 35951047
Alignment:
Q  125 gatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 216  Q
    ||||||||||| |||| |||| | ||| ||| | |||| ||| |||||||| || |||| |||||||||| ||||||||| |||||||||||    
T  35951138 gatttatgtttagatacattcgtataatagtggcttgaacaaaaaattcaatgccaaaactcaattgtaggggcaaaagcgcaaaattctag 35951047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 40339331 - 40339257
Alignment:
Q  127 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaa 202  Q
    ||||||||| |||| ||| | ||||||||  ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  40339331 tttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggct-aaaatcaattgtagaagcaaaa 40339257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 30958142 - 30958044
Alignment:
Q  126 atttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 224  Q
    |||||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30958142 atttatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30958044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 30973954 - 30973856
Alignment:
Q  126 atttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 224  Q
    |||||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30973954 atttatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30973856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 51667243 - 51667153
Alignment:
Q  124 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattct 214  Q
    |||||||||||| | |||||||||||||||||   |||| |||||||||||||||| || ||||||  |||  |||||| ||| |||||||    
T  51667243 tgatttatgtttgggtagattcatgtaaaagtgcgttgaacaataaattcaaggctgaatatcaatcatagttgcaaaaactccaaattct 51667153  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 42534504 - 42534464
Alignment:
Q  166 ataaattcaaggctaaaaatcaattgtagaggcaaaagctc 206  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42534504 ataaatttaaggctaaaaaacaattgtagaggcaaaagctc 42534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 44375518 - 44375564
Alignment:
Q  146 atgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgta 193  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  44375518 atgtaaaagt-gattgaacaataaatttaaggctaaaaatcaattgta 44375564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 23187732 - 23187691
Alignment:
Q  175 aggctaaaaatcaattgtagaggcaaaagctcaaaattctag 216  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  23187732 aggctaaaaatcaattgtagaggtaaaaccttaaaattctag 23187691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 4194008 - 4194060
Alignment:
Q  166 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||||||  |||||||||||||||||||||||||||  ||  |||||||||||    
T  4194008 ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagct 4194060  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 26492636 - 26492568
Alignment:
Q  127 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtaga 195  Q
    ||||||||| |||| ||| ||||| | || |||||| ||||| |||| |||||||||||||||||||||    
T  26492636 tttatgtttggatatatttatgtatacgtggattgaacaatatattcgaggctaaaaatcaattgtaga 26492568  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 25208747 - 25208656
Alignment:
Q  111 gttgcatgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaa 202  Q
    |||| ||||||  ||||||||||||||||||||| |||||||||| |||| |   ||| |||| || |||| |||||| ||||||| |||||    
T  25208747 gttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtggattaaatgatatattcgagtctaataatcaactgtagagacaaaa 25208656  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 7263132 - 7263099
Alignment:
Q  173 caaggctaaaaatcaattgtagaggcaaaagctc 206  Q
    ||||||||||||||||||||||| ||||||||||    
T  7263132 caaggctaaaaatcaattgtagaagcaaaagctc 7263099  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 10859855 - 10859909
Alignment:
Q  164 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||||||||  ||| |||||||||| ||| ||||||||||||| |||||||||||    
T  10859855 caataaatttgaggttaaaaatcaaatgttgaggcaaaagctccaaattctagct 10859909  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 10860373 - 10860425
Alignment:
Q  166 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    |||||| ||| |||||||||||| | ||||||||||||||  |||||||||||    
T  10860373 ataaatccaaagctaaaaatcaactctagaggcaaaagctacaaattctagct 10860425  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 18977376 - 18977420
Alignment:
Q  174 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 218  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||    
T  18977376 aaggctaaaaatcaattgtagaaacaaaaactctaaattctagct 18977420  T

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