View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_23 (Length: 323)

Name: NF8556_low_23
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_23
NF8556_low_23
[»] chr5 (8 HSPs)
chr5 (1-181)||(31159022-31159202)
chr5 (1-156)||(31198390-31198545)
chr5 (9-173)||(41352124-41352293)
chr5 (3-166)||(25832092-25832252)
chr5 (271-305)||(31507360-31507394)
chr5 (271-308)||(16926452-16926489)
chr5 (271-308)||(22657768-22657805)
chr5 (271-308)||(40643094-40643131)
[»] chr3 (10 HSPs)
chr3 (1-176)||(25791961-25792136)
chr3 (269-308)||(33212395-33212434)
chr3 (271-305)||(12906151-12906185)
chr3 (271-305)||(43408192-43408226)
chr3 (271-308)||(9582243-9582280)
chr3 (271-308)||(21458982-21459019)
chr3 (271-308)||(27646306-27646343)
chr3 (271-308)||(28673294-28673331)
chr3 (271-308)||(50517522-50517559)
chr3 (271-308)||(53164163-53164200)
[»] chr6 (6 HSPs)
chr6 (1-166)||(14267623-14267785)
chr6 (1-151)||(2326183-2326330)
chr6 (266-305)||(9342102-9342141)
chr6 (271-308)||(9341838-9341875)
chr6 (269-305)||(7772440-7772476)
chr6 (269-305)||(25045380-25045416)
[»] chr7 (6 HSPs)
chr7 (179-233)||(17828228-17828282)
chr7 (270-308)||(19845669-19845707)
chr7 (271-305)||(27881827-27881861)
chr7 (271-308)||(19292839-19292876)
chr7 (271-308)||(21119557-21119594)
chr7 (265-305)||(27529490-27529530)
[»] chr2 (4 HSPs)
chr2 (268-308)||(10399462-10399502)
chr2 (271-305)||(36556403-36556437)
chr2 (271-308)||(11852185-11852222)
chr2 (271-307)||(6027618-6027654)
[»] scaffold0039 (1 HSPs)
scaffold0039 (271-305)||(94049-94083)
[»] chr4 (5 HSPs)
chr4 (271-305)||(25123983-25124017)
chr4 (271-308)||(28298371-28298408)
chr4 (268-305)||(29460441-29460478)
chr4 (267-308)||(49373693-49373734)
chr4 (271-307)||(36901111-36901147)
[»] chr1 (8 HSPs)
chr1 (271-305)||(15302747-15302781)
chr1 (271-305)||(28888427-28888461)
chr1 (271-308)||(22567066-22567103)
chr1 (269-305)||(896790-896826)
chr1 (267-295)||(9378837-9378865)
chr1 (269-305)||(9715624-9715660)
chr1 (269-305)||(45285549-45285585)
chr1 (271-303)||(51422165-51422197)
[»] scaffold0250 (1 HSPs)
scaffold0250 (271-308)||(9426-9463)
[»] chr8 (1 HSPs)
chr8 (271-308)||(29321294-29321331)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 31159022 - 31159202
Alignment:
Q  1 tgggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaataactcttgaagactacaa 100  Q
    |||||||||||||||||||||||   ||||||||||||||||||||   |||||| ||||||| ||||  |||||||||||||| | ||   ||  ||||    
T  31159022 tgggtgtgagctatcattttgaaaatgagattgaagaggttttgcaacatattcataagaattatgttcaaaatggagaaataattatttttgaagacaa 31159121  T
Q  101 cctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttttaccaagtattccctcaacttattt 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || || ||||||||    
T  31159122 cctttgctctcttgctgtgctatttaggttgttgaggcaacaaggacttcatgtttcaccaagtatgccatcgacttattt 31159202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31198390 - 31198545
Alignment:
Q  1 tgggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaataactcttgaagactacaa 100  Q
    |||||||||| ||||| ||||||   ||||||||||||||||||||   |||||| ||||||| ||||  |||||||||||||| | ||   ||  ||||    
T  31198390 tgggtgtgagttatcactttgaaaaggagattgaagaggttttgcaacatattcataagaattatgttcaaaatggagaaataattattttcgaaaacaa 31198489  T
Q  101 cctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttt 156  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31198490 cctttgctctcttgctgtgctatttaggttgctgaggcaacaaggacttcacgttt 31198545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 41352293 - 41352124
Alignment:
Q  9 agctatcattttgaacgagagattgaagaggttttgc---atggtattcacaagaattttgttgtaaatggagaaataa------ctcttgaagactaca 99  Q
    ||||||||||||||||  |||||||||||||||||||   ||  ||||||||| |||| ||||| ||||||||||||||      || |||||||| |||    
T  41352293 agctatcattttgaacatgagattgaagaggttttgctacata-tattcacaataattatgttgaaaatggagaaataataattacttttgaagacaaca 41352195  T
Q  100 acctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttttaccaagtattccctca 173  Q
       ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  41352194 ---tttgctctcttgctgtgctatttaggttgttgaggcaacaaggatttcacgtttcaccaagtataccctca 41352124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 25832092 - 25832252
Alignment:
Q  3 ggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaataactcttgaagactacaacc 102  Q
    ||||| || ||||||||||||   |||||||| || ||||||||   ||||||||| |  | ||||| |||||||||||||| |||| |||||   | ||    
T  25832092 ggtgttagttatcattttgaaaacgagattgacgaagttttgcaacatattcacaacagctgtgttgaaaatggagaaataattcttaaagac---agcc 25832188  T
Q  103 tttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttttaccaagtat 166  Q
    ||| |||||| ||||||||||||||| | ||||||||||||||| || | |||| |||||||||    
T  25832189 tttactctctcgctgtgctatttagggttttgaggcaacaaggattttatgtttcaccaagtat 25832252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 31507360 - 31507394
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    ||||||||||||| |||||||||||||||||||||    
T  31507360 tactacctccatctctaattataaggtccttttga 31507394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 16926452 - 16926489
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||||||||||||||||||  |||||||||||    
T  16926452 tactacctccatccctaattataagacccttttgagaa 16926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 22657768 - 22657805
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  22657768 tactacctccgtccctaattataagatccttttgagaa 22657805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 40643094 - 40643131
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  40643094 tactacctccgtccctaattataagatccttttgagaa 40643131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 25791961 - 25792136
Alignment:
Q  1 tgggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaata---actcttgaagacta 97  Q
    ||||| ||| |||||||||||||   |||||||| ||| ||||||| | |||||||||||||| ||||  |||||||||||||   ||| ||||||   |    
T  25791961 tgggtttgaactatcattttgaagatgagattgatgagattttgcaagatattcacaagaattatgttcaaaatggagaaataattacttttgaag---a 25792057  T
Q  98 caacctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttttaccaagtattccctcaact 176  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  25792058 caacctttgctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgtttcaccaagtatacactcaact 25792136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 33212395 - 33212434
Alignment:
Q  269 attactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  33212395 attactacctccgtccctaattataagatccttttgagaa 33212434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 12906151 - 12906185
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||| ||||||||||||||||||||||||    
T  12906151 tactacctccgtccctaattataaggtccttttga 12906185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 43408192 - 43408226
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||| ||||||||||||||||||||||||    
T  43408192 tactacctccgtccctaattataaggtccttttga 43408226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 9582243 - 9582280
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||||||||||||||||||  |||||||||||    
T  9582243 tactacctccatccctaattataagacccttttgagaa 9582280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 21458982 - 21459019
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  21458982 tactacctccgtccctaattataagatccttttgagaa 21459019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 27646343 - 27646306
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  27646343 tactacctccgtccctaattataagatccttttgagaa 27646306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 28673331 - 28673294
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  28673331 tactacctccgtccctaattataagatccttttgagaa 28673294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 50517559 - 50517522
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  50517559 tactacctccgtccctaattataagatccttttgagaa 50517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 53164163 - 53164200
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  53164163 tactacctccgtccctaattataagatccttttgagaa 53164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 14267785 - 14267623
Alignment:
Q  1 tgggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaataactcttgaagactacaa 100  Q
    |||||||||| ||||| ||||||  ||| ||||| || ||||||||     |||||||||  | ||||| |||||||||| ||| ||||||||||   ||    
T  14267785 tgggtgtgagttatcactttgaaaaagaaattgatgatgttttgcaacaagttcacaagagctgtgttgaaaatggagaagtaattcttgaagac---aa 14267689  T
Q  101 cctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttcacgttttaccaagtat 166  Q
    |||||  ||||||||||||||||||||| ||||||||||||||||| || |||||| ||| |||||    
T  14267688 ccttttttctcttgctgtgctatttagggtgttgaggcaacaaggattttacgtttcaccgagtat 14267623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 2326183 - 2326330
Alignment:
Q  1 tgggtgtgagctatcattttgaacgagagattgaagaggttttgcatggtattcacaagaattttgttgtaaatggagaaataactcttgaagactacaa 100  Q
    ||||||||||||||||||  |||   |||||||| || ||| ||||    ||||||||||  | ||||| ||||||||||||||| |||||||||   ||    
T  2326183 tgggtgtgagctatcattacgaaaatgagattgatgaagttatgcaatacattcacaagagctatgttgaaaatggagaaataacgcttgaagac---aa 2326279  T
Q  101 cctttcctctcttgctgtgctatttaggttgttgaggcaacaaggacttca 151  Q
    ||||| | ||||| |||| ||||| ||| ||||||||||||||||| ||||    
T  2326280 cctttgcactctttctgttctattcaggctgttgaggcaacaaggatttca 2326330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 9342141 - 9342102
Alignment:
Q  266 ataattactacctccatccctaattataaggtccttttga 305  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9342141 ataattactacctccgtccctaattataaggtccttttga 9342102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 9341838 - 9341875
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  9341838 tactacctccgtccctaattataagatccttttgagaa 9341875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 7772476 - 7772440
Alignment:
Q  269 attactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  7772476 attactacctccgtccctaattataaggcccttttga 7772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 25045380 - 25045416
Alignment:
Q  269 attactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  25045380 attactacctccgtccctaattataaggcccttttga 25045416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 17828282 - 17828228
Alignment:
Q  179 ttttgatgattggttatcttcgaggccacattattaattactttttaatgtcact 233  Q
    |||| |||||| |||||||||||||| || ||||||||||||||| |||||||||    
T  17828282 tttttatgattagttatcttcgaggctactttattaattacttttaaatgtcact 17828228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 19845707 - 19845669
Alignment:
Q  270 ttactacctccatccctaattataaggtccttttgagaa 308  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  19845707 ttactacctccgtccctaattataagatccttttgagaa 19845669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 27881827 - 27881861
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||| ||||||||||||||||||||||||    
T  27881827 tactacctccgtccctaattataaggtccttttga 27881861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 19292839 - 19292876
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  19292839 tactacctccgtccctaattataagatccttttgagaa 19292876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 21119557 - 21119594
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  21119557 tactacctccgtccctaattataagatccttttgagaa 21119594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 27529530 - 27529490
Alignment:
Q  265 tataattactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  27529530 tataattactacctccgtccctaattataggatccttttga 27529490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 10399502 - 10399462
Alignment:
Q  268 aattactacctccatccctaattataaggtccttttgagaa 308  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  10399502 aattactacctccatccctaattataagacccttttgagaa 10399462  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 36556437 - 36556403
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||||||||||||||||||| ||||||    
T  36556437 tactacctccatccctaattataaggtcattttga 36556403  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 11852222 - 11852185
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  11852222 tactacctccgtccctaattataagatccttttgagaa 11852185  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 6027618 - 6027654
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgaga 307  Q
    |||||||||| |||||||||||||| |||||||||||    
T  6027618 tactacctccgtccctaattataagatccttttgaga 6027654  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 94083 - 94049
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||||||||||||||||| ||||||||    
T  94083 tactacctccatccctaattataaggcccttttga 94049  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 25123983 - 25124017
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    |||||||||| ||||||||||||||||||||||||    
T  25123983 tactacctccgtccctaattataaggtccttttga 25124017  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 28298408 - 28298371
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  28298408 tactacctccgtccctaattataagatccttttgagaa 28298371  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 29460441 - 29460478
Alignment:
Q  268 aattactacctccatccctaattataaggtccttttga 305  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  29460441 aattactacctccgtccctaattataaggcccttttga 29460478  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 49373734 - 49373693
Alignment:
Q  267 taattactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||||||| ||||||||||||||  |||||||||||    
T  49373734 taattactacctccgtccctaattataagacccttttgagaa 49373693  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 36901147 - 36901111
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgaga 307  Q
    |||||||||| |||||||||||||| |||||||||||    
T  36901147 tactacctccgtccctaattataagatccttttgaga 36901111  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 15302781 - 15302747
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    ||||||||||||||||||||||||| |||||||||    
T  15302781 tactacctccatccctaattataagatccttttga 15302747  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 28888461 - 28888427
Alignment:
Q  271 tactacctccatccctaattataaggtccttttga 305  Q
    ||||||||||||||||||||||||| |||||||||    
T  28888461 tactacctccatccctaattataagatccttttga 28888427  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 22567066 - 22567103
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  22567066 tactacctccgtccctaattataagatccttttgagaa 22567103  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 896790 - 896826
Alignment:
Q  269 attactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||| || |||||||||||||||||||||    
T  896790 attactacctccgtctctaattataaggtccttttga 896826  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 9378837 - 9378865
Alignment:
Q  267 taattactacctccatccctaattataag 295  Q
    |||||||||||||||||||||||||||||    
T  9378837 taattactacctccatccctaattataag 9378865  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 9715660 - 9715624
Alignment:
Q  269 attactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  9715660 attactacctccgtccctaattataaggcccttttga 9715624  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 45285549 - 45285585
Alignment:
Q  269 attactacctccatccctaattataaggtccttttga 305  Q
    |||||||||||| |||||||||||| |||||||||||    
T  45285549 attactacctccgtccctaattatagggtccttttga 45285585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 51422165 - 51422197
Alignment:
Q  271 tactacctccatccctaattataaggtcctttt 303  Q
    |||||||||| ||||||||||||||||||||||    
T  51422165 tactacctccgtccctaattataaggtcctttt 51422197  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 9463 - 9426
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  9463 tactacctccgtccctaattataagatccttttgagaa 9426  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 29321331 - 29321294
Alignment:
Q  271 tactacctccatccctaattataaggtccttttgagaa 308  Q
    |||||||||||||||||||||||||  |||||||||||    
T  29321331 tactacctccatccctaattataagacccttttgagaa 29321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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