View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_25 (Length: 318)

Name: NF8556_low_25
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_25
NF8556_low_25
[»] chr3 (1 HSPs)
chr3 (12-304)||(32793478-32793770)
[»] chr8 (2 HSPs)
chr8 (38-100)||(38940593-38940655)
chr8 (31-106)||(42381830-42381905)
[»] chr4 (1 HSPs)
chr4 (38-95)||(52017182-52017239)
[»] scaffold0035 (1 HSPs)
scaffold0035 (31-106)||(79526-79601)
[»] chr5 (1 HSPs)
chr5 (31-106)||(1746915-1746990)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 32793478 - 32793770
Alignment:
Q  12 tggacatcacacgggcacaaaagcgtagaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttcaaacgtgaaatccaacg 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||     
T  32793478 tggacaccacacgggcacaaaagcgtagaacactaaaactttaaaatcttctacaaattattcttgcatcaattctctatttcaaacgtgaaattcaaca 32793577  T
Q  112 gtaggtttgacattgcattatcacaaaattcaaccatgcatccaatacatttgatcgattatcaacaacgttaggattaattttcacatacataaataaa 211  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32793578 ctaggtttgacattgcattatcacaaaattcaaccatgcatccaatacatttgatcgattatcaacaacgttaggattaattttcacttacataaataaa 32793677  T
Q  212 caacgaatacacttgaggattaatttgatcatgatgaccaaattaaatgttacgaccaacaacaaattcataaaacattacaacggtaaaact 304  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32793678 caacgaatacaattgaggactaatttgatcatgatgaccaaattaaatgttacgaccaacaacaaattcataaaacattacaacggtaaaact 32793770  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 38940593 - 38940655
Alignment:
Q  38 agaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttcaaacgt 100  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  38940593 agaacactaaaactttaaaatcatctacaaaatattcttgcatcaattctctatttcatacgt 38940655  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 42381830 - 42381905
Alignment:
Q  31 aaagcgtagaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttcaaacgtgaaatc 106  Q
    |||| |||||| |||||||||| ||||  ||||||| | |||| ||||||| |||||||||||||| |||| ||||    
T  42381830 aaagtgtagaatactaaaacttaaaaaatttctacataatatttttgcatctattctctatttcaatcgtgtaatc 42381905  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 52017182 - 52017239
Alignment:
Q  38 agaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttca 95  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  52017182 agaacactaaaactttaaaatcatctacaaaatattcttgcatcaattctctatttca 52017239  T

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Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 79526 - 79601
Alignment:
Q  31 aaagcgtagaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttcaaacgtgaaatc 106  Q
    |||| |||||| |||||||||| ||||  ||||||| | |||| |||||||||||||||||||||| |||| ||||    
T  79526 aaagtgtagaatactaaaacttaaaaaatttctacataatatttttgcatcaattctctatttcaatcgtgtaatc 79601  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 1746915 - 1746990
Alignment:
Q  31 aaagcgtagaacactaaaactttaaaatcttctacaaagtattcttgcatcaattctctatttcaaacgtgaaatc 106  Q
    |||| |||||| |||||||||| ||||  ||||||| | |||| ||||||||| |||||||||||| |||| ||||    
T  1746915 aaagtgtagaatactaaaacttaaaaaatttctacataatatttttgcatcaactctctatttcaatcgtgtaatc 1746990  T

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