View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_26 (Length: 313)
Name: NF8556_low_26
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 30718191 - 30718099
Alignment:
| Q |
23 |
cagcagagaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
115 |
Q |
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| T |
30718191 |
cagcaaagaacgagaagatctgcctcgaagattacattcatcttcttcactctcgccacaccgttgatctcaccatgaatcaactcaatcagg |
30718099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 30718021 - 30717961
Alignment:
| Q |
194 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtaca |
254 |
Q |
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| T |
30718021 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtaca |
30717961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 30894118 - 30894210
Alignment:
| Q |
23 |
cagcagagaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg |
115 |
Q |
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| T |
30894118 |
cagcaaagaacgaaaagctctgcctcgaagattacattcatcttcttcactctcgcaacaccaatgatctcactatgaatcaactcaatcagg |
30894210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 30894286 - 30894346
Alignment:
| Q |
194 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtaca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30894286 |
ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtaca |
30894346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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