View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_28 (Length: 307)
Name: NF8556_low_28
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 45417680 - 45417952
Alignment:
| Q |
18 |
agagaaacgtggagtttctgaaagcagcagcaggtattgggggaagacatcatgcaccaccaccacctccgcactactcgccgggaccagttcagaaact |
117 |
Q |
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| T |
45417680 |
agagaaacgtggagtttctgaaagcagcagcaggtattgggggaagacatcatgcaccaccaccacctccgcactactcgccgggaccagttcagaaact |
45417779 |
T |
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| Q |
118 |
aaattctcctcccactcccgctgcagacattctgagacatcatcgacactcaccaccacctcctccccaatataatccaggaccaactccagggctttta |
217 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45417780 |
aaattctcctcccactcccgccgcagacgttctgagacatcatcgacactcaccaccacctcctccccaatataatccaggaccaactccagggctttta |
45417879 |
T |
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| Q |
218 |
attctgccagcaacttctggaaacccaacagctcggaaacatattttgtaccagaattctcctcctaatatct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45417880 |
attctgccagcaacttctggaaacccaacagctcggaaacatattttgtaccagaattctcctcctaatatct |
45417952 |
T |
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