View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_3 (Length: 627)
Name: NF8556_low_3
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 28090631 - 28091221
Alignment:
| Q |
18 |
cttggaacggaaggtcccatgttatttgggttcatgttctcttcatcaccagcaataaatggcttggaaggaggagttcctattagcatttcactttttt |
117 |
Q |
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| T |
28090631 |
cttggaacggaaggtcccatgttatttgggttcatgttctcttcatcaccagcaataaatggcttggaaggaggagttcctattagcatttcactttttt |
28090730 |
T |
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| Q |
118 |
gcaggattggttttgttgcaacattaagcattttcttaggcccttgagaattttttatgctggctttagataggactgtggaagaaacaggagagagggg |
217 |
Q |
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| T |
28090731 |
gcaggattggttttgttgcaacattaagtattttcttaggcccttgagaattttttatgctggctttagataggactgtggaagaaacaggagagagggg |
28090830 |
T |
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| Q |
218 |
tttcctagttaatggtgactgaattccaattctctttgcactttgtggtgtcttctttgctgaatgatcataaaccttagaggtaccctttcctgcataa |
317 |
Q |
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| T |
28090831 |
tttcctagttaatggtgactgaattccaattctctttgcactttgtggtgtcttctttgctgaatgatcataaaccttagaggtaccctttcctgcataa |
28090930 |
T |
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| Q |
318 |
gccacaagtgacacaacgcatataaattttcaccttagannnnnnnnaaagacatgatacatgtggaatgagttgaatggcatgctgtcttggttgtgtt |
417 |
Q |
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||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28090931 |
gccacaaatgacacaatgcatataaattttcaccttagattttttttaaagacatgatacatgtggaatgagttgaatggcatgctgtcttggttgtgtt |
28091030 |
T |
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| Q |
418 |
accttttttgttagattgttgaataagagttgattgccttcgatcctgaagcattgcaccaccaacagaaaattttctggtatttggaactcctgttgaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091031 |
accttttttgttagattgttgaataagagttgattgccttcgatcctgaagcattgcaccaccaacagaaaattttctggtatttggaactcctgttgaa |
28091130 |
T |
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| Q |
518 |
catctaggagcctttatcccacttttacttgggctgggttttgatccaaaaagtgtttcatgctctgccaacagttgtccctttagtctct |
608 |
Q |
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| T |
28091131 |
catctaggagcctttatcccacttttacttgggctgggttttgatccaaaaagtgtttcatgctctgccaacagttgtccctttagtctct |
28091221 |
T |
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