View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8556_low_30 (Length: 291)
Name: NF8556_low_30
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_30 |
 | |
|
| [»] chr6 (8 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 11169332 - 11169606
Alignment:
| Q |
17 |
aggtttaactttttataaagtcaacaattccagaagaaacaattccggtgatgtcacctgttgtagctgcatacactgtcttgaaacaatatttggctaa |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11169332 |
aggtttaactttttataaagtcaatcattacagaagaaactattccggtgatgtcacctgttgtagctgcatacactgtctcgaaacaatatttggctaa |
11169431 |
T |
|
| Q |
117 |
taatgataaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaatt |
216 |
Q |
| |
|
||||| ||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
11169432 |
taatggtaaccaacgattcttttttttgttcacgggatgtccaaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaatt |
11169531 |
T |
|
| Q |
217 |
gggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagc |
291 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169532 |
ggatcaaacacacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagc |
11169606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 11208154 - 11208428
Alignment:
| Q |
17 |
aggtttaactttttataaagtcaacaattccagaagaaacaattccggtgatgtcacctgttgtagctgcatacactgtcttgaaacaatatttggctaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11208154 |
aggtttaactttttataaagtcaacaattccagaagaaactatcccggtgatgtcacctgttgcagctgcatacactgtctggaaacaatatttggctaa |
11208253 |
T |
|
| Q |
117 |
taatgataaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaatt |
216 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||| | || |||| |
|
|
| T |
11208254 |
taatggtaaccaacgattcttctttttcttcactggatgcccaaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataatt |
11208353 |
T |
|
| Q |
217 |
gggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagc |
291 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||| |||||||| |
|
|
| T |
11208354 |
ggatcaaacacacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagc |
11208428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 11274872 - 11274990
Alignment:
| Q |
173 |
cttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
272 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
273 |
aaccacattaacgtcaagc |
291 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11274972 |
aaccacattaacgtcaagc |
11274990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 11273142 - 11273292
Alignment:
| Q |
17 |
aggtttaactttttataaagtcaacaattccagaagaaacaattccggtgatgtcacctgttgtagctgcatacactgtcttgaaacaatatttggctaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||| |
|
|
| T |
11273142 |
aggtttaactttttataaagtcaacaattacagaagaaactattccggtgatgtcacctgttgtaactgcatacactgactggaaacaatattttgctaa |
11273241 |
T |
|
| Q |
117 |
taatgataaccaacgatacttctttttcttcactggatgtccaaccatagta |
168 |
Q |
| |
|
||||||||||||| ||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
11273242 |
taatgataaccaatgattattttttttcttcact-gatgtccaaccatagta |
11273292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 11242205 - 11242134
Alignment:
| Q |
220 |
tcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
11242205 |
tcaaacacacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagc |
11242134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 11195606 - 11195767
Alignment:
| Q |
123 |
taaccaacgatacttctttttcttcactggatgtccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaattgggtca |
222 |
Q |
| |
|
||||||| ||| ||| || ||||| |||| || ||||||||| |||| ||||||| |||||| | |||||| |||||| |||| | | || || ||| |
|
|
| T |
11195606 |
taaccaatgattctttttattctttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatca |
11195705 |
T |
|
| Q |
223 |
aacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaac |
284 |
Q |
| |
|
|| |||||||||||||||||| ||||| | ||||| | || |||||| |||||||| ||||| |
|
|
| T |
11195706 |
aatacacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacgttaac |
11195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 11155193 - 11155320
Alignment:
| Q |
157 |
ccaaccatagtaccttcttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctataacattcaa |
256 |
Q |
| |
|
||||||||| |||| ||||||| |||||| | |||||| |||||| |||| | | || || ||||| |||||||||||||||||| ||||| | |||| |
|
|
| T |
11155193 |
ccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaa |
11155292 |
T |
|
| Q |
257 |
aatcttgttgttctgcaaccacattaac |
284 |
Q |
| |
|
| | || |||||| |||| ||| ||||| |
|
|
| T |
11155293 |
attgttcttgttccgcaatcacgttaac |
11155320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 11315976 - 11315900
Alignment:
| Q |
171 |
ttcttgcataccatgtccctcatcctttatcatctttataacaattgggtcaaacacacttgaaagaatgctcctat |
247 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||| | || |||| ||||||||||||||||| || ||||||| |
|
|
| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
11315900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University