View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_33 (Length: 276)

Name: NF8556_low_33
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_33
NF8556_low_33
[»] chr4 (2 HSPs)
chr4 (18-266)||(31533022-31533273)
chr4 (42-96)||(13169329-13169383)
[»] chr2 (3 HSPs)
chr2 (42-121)||(7581950-7582029)
chr2 (42-102)||(823840-823900)
chr2 (44-97)||(13548788-13548841)
[»] chr8 (4 HSPs)
chr8 (72-112)||(40907901-40907941)
chr8 (42-97)||(19489008-19489063)
chr8 (42-112)||(20992986-20993056)
chr8 (72-112)||(34365729-34365769)
[»] chr1 (2 HSPs)
chr1 (42-109)||(29069716-29069783)
chr1 (42-112)||(31427022-31427092)
[»] scaffold0542 (1 HSPs)
scaffold0542 (42-112)||(3961-4031)
[»] chr7 (2 HSPs)
chr7 (42-119)||(14657716-14657793)
chr7 (42-111)||(32571721-32571790)
[»] chr5 (1 HSPs)
chr5 (42-139)||(39915672-39915768)
[»] chr3 (2 HSPs)
chr3 (40-97)||(550383-550440)
chr3 (72-112)||(53293281-53293321)
[»] chr6 (1 HSPs)
chr6 (42-114)||(16360907-16360979)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 31533022 - 31533273
Alignment:
Q  18 ggttgtgtgttttttatttcgcgttgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtcgatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  31533022 ggttgtgtgttttttatttcgcgttgtttatttgattcagattgaaaaagcatctttgatcaaatgcaaattcaatcaatggttttgacgtcgtcgatgt 31533121  T
Q  118 tgtaagatacggatacatgtgttttcgatgttgtgatccnnnnnnnnnnnnagtgactttgaatttgtattccac-tggaagtgaatctaaatctaaa-- 214  Q
    |||||||||||||||||||||||||||||||||||||||            | ||||||||||||||||||||||  |||||||||||||||||||||      
T  31533122 tgtaagatacggatacatgtgttttcgatgttgtgatccttttttatttttaatgactttgaatttgtattccacagggaagtgaatctaaatctaaaac 31533221  T
Q  215 acacacagatagcatagaaacctttagttatccctcctccttcttcttcttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31533222 acacacagatagcatagaaacctttagttatccctcctccttcttcttcttc 31533273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 13169383 - 13169329
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaa 96  Q
    ||||||||||||||||||||||| |  |  ||||||||| |||||||||||||||    
T  13169383 tgtttatttgattcagattgaaagattagttttgatcaagtgcaaattcaatcaa 13169329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 7582029 - 7581950
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtcgatgttgta 121  Q
    |||||||||||||||| |||||| |  |||||||| ||| |||||||||||||||  | |||||||||||| | ||||||    
T  7582029 tgtttatttgattcaggttgaaatattatctttgagcaagtgcaaattcaatcaacgactttgacgtcgtcaacgttgta 7581950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 823900 - 823840
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattt 102  Q
    |||||||||||||||||||||||||  | |||||| ||| | || ||||||||||||||||    
T  823900 tgtttatttgattcagattgaaaaattagctttgagcaagttcagattcaatcaataattt 823840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 13548841 - 13548788
Alignment:
Q  44 tttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaat 97  Q
    |||||||||||||| |||||| |  | ||||||||||||||| |||||||||||    
T  13548841 tttatttgattcaggttgaaagattagctttgatcaaatgcagattcaatcaat 13548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 40907901 - 40907941
Alignment:
Q  72 tttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  40907901 tttgatcaaatacaaattcaatcaataactttgacgtcgtc 40907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 19489008 - 19489063
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaat 97  Q
    |||||||||||||||| |||||| |  | |||||||||| ||||||||||||||||    
T  19489008 tgtttatttgattcaggttgaaagattaactttgatcaagtgcaaattcaatcaat 19489063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 20992986 - 20993056
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    |||||||||||||| | ||||||||  | |||||| |||||||| ||||||| ||| |||||||| |||||    
T  20992986 tgtttatttgattctggttgaaaaattaactttgagcaaatgcagattcaattaatgattttgacatcgtc 20993056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 34365729 - 34365769
Alignment:
Q  72 tttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    |||||||||||||| || |||| ||||||||||||||||||    
T  34365729 tttgatcaaatgcatatccaataaataattttgacgtcgtc 34365769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 29069783 - 29069716
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtc 109  Q
    ||||||||||||||||||||||| |  |  ||||||||| |||| ||||||||||| | |||||||||    
T  29069783 tgtttatttgattcagattgaaagattaattttgatcaagtgcatattcaatcaatgactttgacgtc 29069716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 31427092 - 31427022
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    |||||||||||||||| |||||| |  | |||||||||| ||||| |||||||||||| |||  |||||||    
T  31427092 tgtttatttgattcaggttgaaagattaactttgatcaagtgcaacttcaatcaataacttttgcgtcgtc 31427022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 3961 - 4031
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    ||||||||||||||| ||| ||| |  |||||||||||| |||| || |||||||||| |||| |||||||    
T  3961 tgtttatttgattcaaattaaaagattatctttgatcaagtgcagatccaatcaataactttggcgtcgtc 4031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 14657793 - 14657716
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtcgatgttg 119  Q
    ||||||||||||||||||||||| |  | |||||| |||||||| |||| |||||| | |||| |||| || ||||||    
T  14657793 tgtttatttgattcagattgaaagattaactttgagcaaatgcatattcgatcaatgactttggcgtcatcaatgttg 14657716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 32571790 - 32571721
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgt 111  Q
    |||||||||||||||| || |||||  |  ||||| |||||||| |||||||||| | ||||||||||||    
T  32571790 tgtttatttgattcaggttaaaaaattagttttgagcaaatgcagattcaatcaaaatttttgacgtcgt 32571721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 39915672 - 39915768
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtcgatgttgtaagatacggatacatgtgt 139  Q
    ||||||||| |||||| |||||| |  | |||||| ||| |||| || |||||||||| |||||||||||| | |||| ||||| |||| ||||||||    
T  39915672 tgtttattttattcaggttgaaagattagctttgagcaagtgcatatccaatcaataactttgacgtcgtcaacgttg-aagattcggagacatgtgt 39915768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 550383 - 550440
Alignment:
Q  40 gttgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaat 97  Q
    ||||||||||||||||||||||||| |  | |||| ||||| |||| |||||||||||    
T  550383 gttgtttatttgattcagattgaaatattagctttcatcaattgcatattcaatcaat 550440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 53293281 - 53293321
Alignment:
Q  72 tttgatcaaatgcaaattcaatcaataattttgacgtcgtc 112  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  53293281 tttgatcaagtgcatattcaatcaatgattttgacgtcgtc 53293321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 16360979 - 16360907
Alignment:
Q  42 tgtttatttgattcagattgaaaaaacatctttgatcaaatgcaaattcaatcaataattttgacgtcgtcga 114  Q
    ||||||||||||| || ||||||||  |  |||||  || |||||||| ||||||| ||||||||||||||||    
T  16360979 tgtttatttgatttaggttgaaaaattagttttgagtaagtgcaaatttaatcaatgattttgacgtcgtcga 16360907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University