View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_36 (Length: 253)

Name: NF8556_low_36
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_36
NF8556_low_36
[»] chr6 (2 HSPs)
chr6 (1-243)||(11390691-11390933)
chr6 (1-243)||(11419691-11419933)
[»] chr3 (16 HSPs)
chr3 (1-168)||(24614659-24614826)
chr3 (1-172)||(24108841-24109012)
chr3 (3-172)||(24116550-24116719)
chr3 (1-172)||(23689756-23689927)
chr3 (1-172)||(24061993-24062164)
chr3 (9-173)||(23693213-23693377)
chr3 (9-173)||(23711653-23711817)
chr3 (9-173)||(23730109-23730273)
chr3 (9-173)||(23748564-23748728)
chr3 (180-243)||(23693128-23693191)
chr3 (180-243)||(23711568-23711631)
chr3 (180-243)||(23730024-23730087)
chr3 (180-243)||(23748479-23748542)
chr3 (180-243)||(23689670-23689733)
chr3 (180-243)||(24061907-24061970)
chr3 (180-235)||(24116742-24116797)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 11390933 - 11390691
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390933 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 11390834  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390833 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataa 11390734  T
Q  201 ggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  11390733 ggtgttgtaactgttaaattccaatccagtttttgcagtataa 11390691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11419691 - 11419933
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419691 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 11419790  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419791 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataa 11419890  T
Q  201 ggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  11419891 ggtgttgtaactgttaaattccaatccagtttttgcagtataa 11419933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 24614826 - 24614659
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    |||| ||||||||||||||| |||| || ||||||||||||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| ||    
T  24614826 tacacatcttcaaatcattgctccaaaagggataccttccaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgca 24614727  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtctt 168  Q
    |||||| || | || ||||||||||||||| || |||||||||||||| || ||||| ||||||||||    
T  24614726 cacaatggattgatttgtcaagctcagctcagagaagaaaaacaccatgttctccatgatcttgtctt 24614659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 24108841 - 24109012
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    |||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| ||    
T  24108841 tacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgca 24108940  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 172  Q
    |||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||| ||||||||    
T  24108941 cacaatagaatgatttgtcaagctgagttcagaaaagaaaaacaccatcttctccatgatcttatcttcatc 24109012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 24116550 - 24116719
Alignment:
Q  3 catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacaca 102  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| ||||    
T  24116550 catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcaca 24116649  T
Q  103 caattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 172  Q
    |||| |||| || ||||||||| |  || |||||||||||||||||||| ||||| ||||||||||||||    
T  24116650 caatagaatgatttgtcaagctgacttccgaaaagaaaaacaccatattctccatgatcttgtcttcatc 24116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 23689927 - 23689756
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    |||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| ||    
T  23689927 tacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgca 23689828  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 172  Q
     ||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||||||||||||    
T  23689827 gacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgatcttgtcttcatc 23689756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 24062164 - 24061993
Alignment:
Q  1 tacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcaca 100  Q
    |||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| ||    
T  24062164 tacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgca 24062065  T
Q  101 cacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 172  Q
     ||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||||||||||||    
T  24062064 gacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgatcttgtcttcatc 24061993  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 23693377 - 23693213
Alignment:
Q  9 ttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattg 108  Q
    |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||||| |    
T  23693377 ttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag 23693278  T
Q  109 aataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 173  Q
    ||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23693277 aatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23693213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 23711817 - 23711653
Alignment:
Q  9 ttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattg 108  Q
    |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||||| |    
T  23711817 ttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag 23711718  T
Q  109 aataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 173  Q
    ||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23711717 aatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23711653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 23730273 - 23730109
Alignment:
Q  9 ttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattg 108  Q
    |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||||| |    
T  23730273 ttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag 23730174  T
Q  109 aataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 173  Q
    ||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23730173 aatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23730109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 23748728 - 23748564
Alignment:
Q  9 ttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattg 108  Q
    |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |||||||| |    
T  23748728 ttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag 23748629  T
Q  109 aataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 173  Q
    ||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23748628 aatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23748564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23693191 - 23693128
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23693191 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23693128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23711631 - 23711568
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23711631 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23730087 - 23730024
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23730087 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23730024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23748542 - 23748479
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23748542 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23748479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23689733 - 23689670
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| |||||| |||||| ||||    
T  23689733 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataa 23689670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 24061970 - 24061907
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 243  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| |||||| |||||| ||||    
T  24061970 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataa 24061907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 24116742 - 24116797
Alignment:
Q  180 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttg 235  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| ||||||||||    
T  24116742 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagtttttg 24116797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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