View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_45 (Length: 239)
Name: NF8556_low_45
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30717856 - 30717634
Alignment:
| Q |
1 |
acgagtttttatttaatctaatggtgctgttgttgatatgcgaatattcaaagaagaagagattgtcgatgaataatttcgttttatgaaatttgcgaaa |
100 |
Q |
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| T |
30717856 |
acgagtttttatttaatctaatgttgctgttgttgatatgcgaattttcaaagaagaagagattgtcgatgaataatttcgttttatgaaatttgcgaaa |
30717757 |
T |
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| Q |
101 |
ctgattttggatctaatttgcagaaagtgttgactgatgctgtggacgcgatcgatctggtggatctaccacgatctacgctttccgagagcatttccgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30717756 |
ctgattttggatctaatttgcagaaagtgttgactgatgctgtggacgcgatcgatctggtggatctaccacgatctacgctttccgagagcatttccgc |
30717657 |
T |
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| Q |
201 |
gtttgctgtgctgacggtggagg |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
30717656 |
gttcgctgtgctgacggtggagg |
30717634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 30894468 - 30894590
Alignment:
| Q |
102 |
tgattttggatctaattt-gcagaaagtgttgactgatgctgtggacgcgatcgatctggtggatctaccacgatctacgctttccgagagcatttccgc |
200 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30894468 |
tgattttggatcgaattttgcagaaagtgttgactgatgctgtggacgcgatcgatctggtggatctaccacgatctacgctttccgagagcatttccgt |
30894567 |
T |
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| Q |
201 |
gtttgctgtgctgacggtggagg |
223 |
Q |
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| T |
30894568 |
gtttgctgtgctgacggtggagg |
30894590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 1619466 - 1619505
Alignment:
| Q |
57 |
aagagattgtcgatgaataatttcgttttatgaaatttgc |
96 |
Q |
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| T |
1619466 |
aagagattgttgatgaataatttagttttatgaaatttgc |
1619505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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