View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_46 (Length: 238)
Name: NF8556_low_46
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 22192733 - 22192518
Alignment:
| Q |
3 |
ttgtatttaataaacatagcagcataatcctcccacaaagtgcagttaagagaaatgtcactacaaatccatttgaaacacatgaacattataattatgc |
102 |
Q |
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| T |
22192733 |
ttgtatttaataaacatagcagcataatcctcccacaaagtgcagttaagagaaatgtcactacaaatccatttgaaacacataaacattataattatgt |
22192634 |
T |
|
| Q |
103 |
gtatctgataggtaaacctagttccccttaattgttttaaagatcaaatgtccaagaagacattaagtcctcaccttagatctttcatagtaaagttaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22192633 |
gtatctgataggtaaacctagttccccttaattgttttaaagatcaaatgtccaagaagacattaagtccccaccttagatctttcatagtaaagttaac |
22192534 |
T |
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| Q |
203 |
ctgga-ctttttccca |
217 |
Q |
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||||| |||||||||| |
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| T |
22192533 |
ctggagctttttccca |
22192518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 158957 - 159000
Alignment:
| Q |
21 |
gcagcataatcctcccacaaagtgcagttaagagaaatgtcact |
64 |
Q |
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| T |
158957 |
gcagcataatcctcccaaagagtgcagttaagagaaatatcact |
159000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 18078823 - 18078866
Alignment:
| Q |
21 |
gcagcataatcctcccacaaagtgcagttaagagaaatgtcact |
64 |
Q |
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| T |
18078823 |
gcagcataatcctcccaaagagtgcagttaagagaaatatcact |
18078866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 32254446 - 32254394
Alignment:
| Q |
12 |
ataaacatagcagcataatcctcccacaaagtgcagttaagagaaatgtcact |
64 |
Q |
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|||||| | |||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
32254446 |
ataaacttcgcagcatagtcctcccacagtgtgcagttaagagatatgtcact |
32254394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 22080620 - 22080664
Alignment:
| Q |
21 |
gcagcataatcctcccacaaagtgcagttaagagaaatgtcacta |
65 |
Q |
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||||||||||||||||| | ||||||||| | ||||||||||||| |
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| T |
22080620 |
gcagcataatcctcccatagagtgcagttgatagaaatgtcacta |
22080664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 24028410 - 24028462
Alignment:
| Q |
12 |
ataaacatagcagcataatcctcccacaaagtgcagttaagagaaatgtcact |
64 |
Q |
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|||||| || ||||||| |||||||||||||||||||||| || |||||||| |
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| T |
24028410 |
ataaacctaccagcatactcctcccacaaagtgcagttaattgagatgtcact |
24028462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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