View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_low_50 (Length: 229)

Name: NF8556_low_50
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_low_50
NF8556_low_50
[»] chr8 (10 HSPs)
chr8 (14-213)||(37681367-37681569)
chr8 (141-198)||(45155133-45155190)
chr8 (19-62)||(38249140-38249183)
chr8 (141-190)||(38248270-38248319)
chr8 (143-198)||(18824259-18824315)
chr8 (46-92)||(38249090-38249136)
chr8 (105-144)||(13196334-13196373)
chr8 (105-144)||(33419138-33419177)
chr8 (141-194)||(16953973-16954027)
chr8 (142-194)||(25591347-25591400)
[»] chr6 (22 HSPs)
chr6 (19-92)||(14282235-14282308)
chr6 (141-198)||(2372534-2372591)
chr6 (19-63)||(5259255-5259299)
chr6 (141-198)||(14281382-14281439)
chr6 (141-198)||(28111669-28111726)
chr6 (150-198)||(5260020-5260068)
chr6 (19-62)||(6512571-6512614)
chr6 (105-144)||(6512743-6512782)
chr6 (19-62)||(28112532-28112575)
chr6 (46-92)||(6512618-6512664)
chr6 (141-198)||(2846507-2846564)
chr6 (141-198)||(28107617-28107674)
chr6 (105-144)||(5259427-5259466)
chr6 (105-144)||(14282118-14282157)
chr6 (46-92)||(5259302-5259348)
chr6 (105-144)||(28108431-28108470)
chr6 (141-198)||(5737926-5737984)
chr6 (141-194)||(9954164-9954218)
chr6 (46-84)||(28108556-28108594)
chr6 (46-92)||(28112482-28112528)
chr6 (89-121)||(6512674-6512706)
chr6 (104-144)||(13942053-13942093)
[»] scaffold2073 (1 HSPs)
scaffold2073 (141-198)||(729-786)
[»] chr3 (7 HSPs)
chr3 (141-198)||(32287168-32287225)
chr3 (140-198)||(3306056-3306115)
chr3 (140-194)||(28327651-28327706)
chr3 (140-194)||(28330976-28331031)
chr3 (141-194)||(539112-539166)
chr3 (141-194)||(54724027-54724081)
chr3 (143-198)||(50461400-50461456)
[»] scaffold0996 (1 HSPs)
scaffold0996 (141-198)||(1784-1841)
[»] chr7 (3 HSPs)
chr7 (143-198)||(6603647-6603703)
chr7 (105-144)||(10468620-10468659)
chr7 (140-194)||(44017648-44017703)
[»] chr2 (17 HSPs)
chr2 (105-144)||(22020539-22020578)
chr2 (143-198)||(33310850-33310906)
chr2 (143-198)||(38015702-38015758)
chr2 (105-144)||(27266259-27266298)
chr2 (46-92)||(22020415-22020461)
chr2 (141-194)||(25959558-25959612)
chr2 (153-194)||(24235295-24235336)
chr2 (104-144)||(1387017-1387057)
chr2 (140-194)||(40677628-40677683)
chr2 (141-194)||(9185293-9185347)
chr2 (141-194)||(9188521-9188575)
chr2 (110-144)||(9966888-9966922)
chr2 (141-194)||(25874363-25874417)
chr2 (153-194)||(24238567-24238608)
chr2 (142-194)||(31427410-31427463)
chr2 (142-198)||(3252516-3252572)
chr2 (142-198)||(13518498-13518554)
[»] chr4 (9 HSPs)
chr4 (141-198)||(19859367-19859425)
chr4 (141-194)||(53094710-53094763)
chr4 (143-198)||(29325025-29325081)
chr4 (143-198)||(56195728-56195784)
chr4 (141-198)||(19864260-19864318)
chr4 (142-194)||(44808823-44808876)
chr4 (142-194)||(34319785-34319838)
chr4 (150-194)||(15432291-15432335)
chr4 (143-194)||(22172242-22172294)
[»] chr5 (4 HSPs)
chr5 (142-198)||(7625304-7625361)
chr5 (143-198)||(14016003-14016059)
chr5 (141-196)||(18239373-18239428)
chr5 (141-199)||(10629414-10629472)
[»] chr1 (11 HSPs)
chr1 (143-198)||(37183728-37183784)
chr1 (143-198)||(45960609-45960665)
chr1 (141-194)||(28111258-28111312)
chr1 (142-211)||(30938411-30938483)
chr1 (142-194)||(27536399-27536452)
chr1 (141-194)||(34732228-34732281)
chr1 (140-194)||(23441140-23441195)
chr1 (153-196)||(29643087-29643130)
chr1 (141-194)||(2794429-2794483)
chr1 (153-194)||(3796695-3796736)
chr1 (143-198)||(31205041-31205097)
[»] scaffold0233 (1 HSPs)
scaffold0233 (142-199)||(10140-10199)
[»] scaffold0084 (1 HSPs)
scaffold0084 (105-144)||(28854-28893)
[»] scaffold0056 (1 HSPs)
scaffold0056 (105-144)||(68119-68158)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 37681569 - 37681367
Alignment:
Q  14 cagagaaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgtgtcacggttgcaaaaacgtga 113  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37681569 cagaaaaaattgaagatgctgaaaaaacgccaaaaatgtgtcacgattttaccagaccagaaaaacatgctttcgacgtgtcacggttgcaaaaacgtga 37681470  T
Q  114 cacgattttgggcgaatttctgagcctattttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctaga---taaccttattgtta 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  37681469 cacgattttgggcgaatttctgagcctattttatgcaatcaaaactaccgcctcgaacactaaaataatttacacatcctagatagtaaccttattgtta 37681370  T
Q  211 aat 213  Q
    |||    
T  37681369 aat 37681367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 45155190 - 45155133
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  45155190 attttatgcaatcaaaactactgcctcgggcactaaaataatttacacatcctagata 45155133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 38249183 - 38249140
Alignment:
Q  19 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattt 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38249183 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattt 38249140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 38248319 - 38248270
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacat 190  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  38248319 attttatgcaatcaaaactactgcatcgggcactaaaataatttacacat 38248270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 18824315 - 18824259
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  18824315 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 18824259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 38249136 - 38249090
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||    
T  38249136 aaaacgtgacacgattttaccagaccataaaaacatgctctcgacgt 38249090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 13196334 - 13196373
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  13196334 aaaacgtgacacaattttgggcgaatttctgtgcctattt 13196373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 33419138 - 33419177
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  33419138 aaaacgtgacacgattttgggcgaatttttgtgcctattt 33419177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 16953973 - 16954027
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  16953973 attttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 16954027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 25591400 - 25591347
Alignment:
Q  142 ttttatgcaa-tcaaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||| ||||||||||| ||||   ||||||||||||||||||||||||    
T  25591400 ttttatgcaaatcaaaactactacctcaggcactaaaataatttacacatccta 25591347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 14282308 - 14282235
Alignment:
Q  19 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  14282308 aaaattgaagatgctgaaaaaacgccaaaaacgtgacacgattttaccagaccagaaaaacatgctctcgacgt 14282235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 2372534 - 2372591
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  2372534 attttatgcaatcaaaactacttcctcggacactaaaataatttacaaatcctagata 2372591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5259255 - 5259299
Alignment:
Q  19 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgatttt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5259255 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgatttt 5259299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 14281439 - 14281382
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||    
T  14281439 attttatgcaatcaaaactactgcgttgggcactaaaataatttacacatcctagata 14281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 28111726 - 28111669
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||    
T  28111726 attttatgcaatcaaaactactgcctagggcactaaaataatttacgcatcctagata 28111669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 5260020 - 5260068
Alignment:
Q  150 aatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  5260020 aatcaaaactactgcctcgggcactaaaataatttacacatcctagata 5260068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 6512571 - 6512614
Alignment:
Q  19 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattt 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  6512571 aaaattgaagatgctgaaaaaacgccaaaaatgtgtcacgattt 6512614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 6512743 - 6512782
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6512743 aaaacgtgacacgattttgggcgaatttctgagcctattt 6512782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 28112575 - 28112532
Alignment:
Q  19 aaaattgaagatgctgaaaaaacgccaaaaacgtgtcacgattt 62  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  28112575 aaaattgaagatgctgaaaaaacgccaaaaacatgtcacgattt 28112532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 6512618 - 6512664
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  6512618 aaaacgtgacacgattttaccagaccagaaaaacatgctctcgacgt 6512664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 2846507 - 2846564
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||| |||||||| ||||||||||  |||| ||||||||||||||||||||||||    
T  2846507 attttatacaatcaaatctactgcctcagacaccaaaataatttacacatcctagata 2846564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 28107674 - 28107617
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||||  ||| |  ||||||||||||||||||||||||||||    
T  28107674 attttatgcaatcaaaactacaacctagggcactaaaataatttacacatcctagata 28107617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 5259427 - 5259466
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5259427 aaaacgtgacacgattttgggcgaatttctgagcttattt 5259466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 14282157 - 14282118
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  14282157 aaaacgtgacatgattttgggcgaatttctgagcctattt 14282118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 5259302 - 5259348
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||    
T  5259302 aaaacgtgacacaattttaccagaccagaaaaacatgctctcgacgt 5259348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 28108470 - 28108431
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  28108470 aaaacgtgacacaattttgggcgaatttatgagcctattt 28108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 5737984 - 5737926
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||| | ||||||||||||||   || |||||||||||||||||||||||||    
T  5737984 attttatgcaaaccaaaactactgcctcaggcattaaaataatttacacatcctagata 5737926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 9954164 - 9954218
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  9954164 attttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 9954218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 28108594 - 28108556
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgct 84  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28108594 aaaacgtgacacgattttaccagagcagaaaaacatgct 28108556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 28112528 - 28112482
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    |||||||| |||||||||||| ||| ||||||||||||| |||||||    
T  28112528 aaaacgtgacacgattttacctgactagaaaaacatgctctcgacgt 28112482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 6512674 - 6512706
Alignment:
Q  89 acgtgtcacggttgcaaaaacgtgacacgattt 121  Q
    |||||||||| ||||||||||||||||||||||    
T  6512674 acgtgtcacgattgcaaaaacgtgacacgattt 6512706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 13942053 - 13942093
Alignment:
Q  104 aaaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  13942053 aaaaacgtgacacgattttgggcgaaattatgtgcctattt 13942093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 786 - 729
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  786 attttatgcaatcaaaactactgcctcgagcactaaaataatttacacatcctagata 729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 32287225 - 32287168
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  32287225 attttatgcaatcaaaactattgcctcgggcactaaaataatttacacatcctagata 32287168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 3306056 - 3306115
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||||| | ||||||||||||||   || |||||||||||||||||||||||||    
T  3306056 tattttatgcaaaccaaaactactgcctcaggcattaaaataatttacacatcctagata 3306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 28327651 - 28327706
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  28327651 tattttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 28327706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 28330976 - 28331031
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  28330976 tattttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 28331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 539112 - 539166
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | |||||||||||||||  || |||||||||||||||||||||    
T  539112 attttatgcaaaccaaaactactgcctcgggcattaaaataatttacacatccta 539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 54724027 - 54724081
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  54724027 attttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 54724081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 50461456 - 50461400
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||| ||| ||||||    
T  50461456 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacatatcatagata 50461400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 1841 - 1784
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  1841 attttatgccatcaaaactactggctcgggcactaaaataatttacacatcctagata 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 6603647 - 6603703
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  6603647 tttatgcaatcaaaactactgcctcggacactaaaagaaatttacacatcctagata 6603703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 10468620 - 10468659
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  10468620 aaaacgtgacacgattttaggcgaatttctgtgcctattt 10468659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 44017703 - 44017648
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  44017703 tattttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 44017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 22020539 - 22020578
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22020539 aaaacgtgacacgattttgggcgaatttctgagcctattt 22020578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 33310850 - 33310906
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  33310850 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 33310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 38015702 - 38015758
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  38015702 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 38015758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 27266259 - 27266298
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27266259 aaaatgtgacacgattttgggcgaatttctgagcctattt 27266298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 22020415 - 22020461
Alignment:
Q  46 aaaacgtgtcacgattttaccagaccagaaaaacatgctttcgacgt 92  Q
    |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  22020415 aaaacgtgacacgatttcaccagaccagaaaaacatgctctcgacgt 22020461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 25959612 - 25959558
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | |||||||||||||| | ||||||||||||||||||||||||    
T  25959612 attttatgcaaaccaaaactactgcctcaagcactaaaataatttacacatccta 25959558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 24235295 - 24235336
Alignment:
Q  153 caaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  24235295 caaaactactgcctcgggcactaaaataatttacacatccta 24235336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 1387057 - 1387017
Alignment:
Q  104 aaaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  1387057 aaaaacgtgacacgattttgggcgaaattctgtgcctattt 1387017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 40677683 - 40677628
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  40677683 tattttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 40677628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 9185347 - 9185293
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  9185347 attttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 9185293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 9188575 - 9188521
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  9188575 attttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 9188521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 9966922 - 9966888
Alignment:
Q  110 gtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||| ||||||||||||||||||||||||||||    
T  9966922 gtgacatgattttgggcgaatttctgagcctattt 9966888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 25874363 - 25874417
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||  ||| |||||||||||||||||||||    
T  25874363 attttatgcaaaccaaaactactgcctcagacattaaaataatttacacatccta 25874417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 24238567 - 24238608
Alignment:
Q  153 caaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| ||||  ||||||||||||||||||||||||    
T  24238567 caaaactactgtctcgggcactaaaataatttacacatccta 24238608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31427463 - 31427410
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatccta 194  Q
    ||||||||||||||||| |||||||||  ||||||||  |||||||||||||||    
T  31427463 ttttatgcaatcaaaaccactgcctcgggcactaaaagaaatttacacatccta 31427410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 3252516 - 3252572
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||||||| | ||||||||  ||||| | | |||||||||||||||||||    
T  3252516 ttttatgcaatcaaaccaactgcctcagacacttataaaatttacacatcctagata 3252572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 13518498 - 13518554
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    |||||||||  |||| |||||||||| |||||| | | |||||||||||||||||||    
T  13518498 ttttatgcacacaaacctactgcctcaaacacttataaaatttacacatcctagata 13518554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 19859425 - 19859367
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||| | ||||||||||||||  |||||||||||||||||||||||||||||    
T  19859425 attttatgcaaaccaaaactactgcctcagacactaaaataatttacacatcctagata 19859367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 53094710 - 53094763
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| |||||||||| |||  |||||||||||||||||||||||||    
T  53094710 attttatgcaataaaaactactgtctcagacactaaaataatttacacatccta 53094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 29325025 - 29325081
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  29325025 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 29325081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 56195728 - 56195784
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  56195728 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 56195784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 19864318 - 19864260
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatcctagata 198  Q
    ||||||||||| | ||||||||||||||   ||||||||||||||||||||||||||||    
T  19864318 attttatgcaaaccaaaactactgcctctggcactaaaataatttacacatcctagata 19864260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 44808876 - 44808823
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatccta 194  Q
    |||||||||||||||||||||||||||  ||||||||  |||||||||||||||    
T  44808876 ttttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatccta 44808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 34319838 - 34319785
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatccta 194  Q
    |||||||||||||||||||||| ||||  ||||||||  |||||||||||||||    
T  34319838 ttttatgcaatcaaaactactgtctcgggcactaaaagaaatttacacatccta 34319785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 15432291 - 15432335
Alignment:
Q  150 aatcaaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||||||||||   || |||||||||||||||||||||    
T  15432291 aatcaaaactactgcctcaggcattaaaataatttacacatccta 15432335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 22172294 - 22172242
Alignment:
Q  143 tttatgcaatcaaaac-tactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||  |||||| ||||||||||  ||||||||||||||||||||||||    
T  22172294 tttatgcacacaaaacatactgcctcgggcactaaaataatttacacatccta 22172242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 7625304 - 7625361
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    |||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  7625304 ttttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 7625361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 14016059 - 14016003
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  14016059 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 14016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 18239428 - 18239373
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctaga 196  Q
    |||||||||||||||| |||||||||    ||| ||||||||||||||||||||||    
T  18239428 attttatgcaatcaaatctactgccttaggcaccaaaataatttacacatcctaga 18239373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 10629414 - 10629472
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctagataa 199  Q
    |||||||||||||||| |||||||||    || ||||||||||||||||||||| ||||    
T  10629414 attttatgcaatcaaatctactgccttaggcattaaaataatttacacatcctaaataa 10629472  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 37183784 - 37183728
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  37183784 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 37183728  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 45960665 - 45960609
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  45960665 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatcctagata 45960609  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 28111258 - 28111312
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||  |||||||||||||||||||||||||    
T  28111258 attttatgcaaaccaaaactactgcctcagacactaaaataatttacacatccta 28111312  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 30938483 - 30938411
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaataatttacacatcctaga---taaccttattgttaa 211  Q
    |||||||||  |||| |||||||||||  || |||||||||||||||||||||||   |||||||||||||||    
T  30938483 ttttatgcacacaaacctactgcctcgggcagtaaaataatttacacatcctagatagtaaccttattgttaa 30938411  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 27536452 - 27536399
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatccta 194  Q
    |||||||||||||||||||||||||||  ||||||||  |||||||||||||||    
T  27536452 ttttatgcaatcaaaactactgcctcgggcactaaaagaaatttacacatccta 27536399  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 34732281 - 34732228
Alignment:
Q  141 attttatgcaatcaaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||| |||||||||||| ||  |||| ||||||||||||||||||||||||    
T  34732281 attttattcaatcaaaactagtgtttcgagcactaaaataatttacacatccta 34732228  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 23441195 - 23441140
Alignment:
Q  140 tattttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||| | ||||||||||||||   ||||||||||||||||||||||||    
T  23441195 tattttatgcaaaccaaaactactgcctcaggcactaaaataatttacacatccta 23441140  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 29643130 - 29643087
Alignment:
Q  153 caaaactactgcctcgaacactaaaataatttacacatcctaga 196  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||    
T  29643130 caaacctactgcctcggacactaaaataatttacacatcttaga 29643087  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 2794429 - 2794483
Alignment:
Q  141 attttatgcaatc-aaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    ||||||||||| | ||||||||||||||  ||| |||||||||||||||||||||    
T  2794429 attttatgcaaaccaaaactactgcctcagacattaaaataatttacacatccta 2794483  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 3796736 - 3796695
Alignment:
Q  153 caaaactactgcctcgaacactaaaataatttacacatccta 194  Q
    |||||||||||||||   ||||||||||||||||||||||||    
T  3796736 caaaactactgcctcatgcactaaaataatttacacatccta 3796695  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 31205041 - 31205097
Alignment:
Q  143 tttatgcaatcaaaactactgcctcgaacactaaaa-taatttacacatcctagata 198  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||| ||| ||||||    
T  31205041 tttatgcaatcaaaactactgcctcgggcactaaaagaaatttacaaatcatagata 31205097  T

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Target: scaffold0233 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 10140 - 10199
Alignment:
Q  142 ttttatgcaatcaaaactactgcctcgaacactaaaataa--tttacacatcctagataa 199  Q
    |||||||||| |||| |||||||||||| |||||||||||  ||||||||||||| ||||    
T  10140 ttttatgcaaacaaacctactgcctcgagcactaaaataaactttacacatcctatataa 10199  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 28854 - 28893
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  28854 aaaacgtgacacgattttgggcgaaattctgtgcctattt 28893  T

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Target: scaffold0056 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 68158 - 68119
Alignment:
Q  105 aaaacgtgacacgattttgggcgaatttctgagcctattt 144  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  68158 aaaacgtgacacgattttaggcgaatttctgtgcctattt 68119  T

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