View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_6 (Length: 445)
Name: NF8556_low_6
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 5272699 - 5272275
Alignment:
| Q |
9 |
tggtgttaatttgcataaatatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatgctgt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5272699 |
tggtgttaatttgcataaatatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatggtgt |
5272600 |
T |
|
| Q |
109 |
aaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgagg |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272599 |
aaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgagg |
5272500 |
T |
|
| Q |
209 |
attgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaatcctggttatgtta |
308 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||||| |||||||||||||||||| |
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| T |
5272499 |
attgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaatcctggttatgtta |
5272400 |
T |
|
| Q |
309 |
atcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctccaaacatgtgcaaggtatattt |
408 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5272399 |
atcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctccaaacatgtgcaaggtatatat |
5272300 |
T |
|
| Q |
409 |
atttatttttagtgtttttggtctct |
434 |
Q |
| |
|
|||| |||| ||||||||||||||| |
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|
| T |
5272299 |
attt-ttttgggtgtttttggtctct |
5272275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 54 - 434
Target Start/End: Complemental strand, 5276633 - 5276254
Alignment:
| Q |
54 |
ttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatgctgtaaccattgaagagattgaaaaggttcttcaaaggattccaattca |
153 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5276633 |
ttttggttttggaattgtaggacaaaatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaggttcttcaaaggattccaattca |
5276534 |
T |
|
| Q |
154 |
tcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaag |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
5276533 |
tcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaag |
5276434 |
T |
|
| Q |
254 |
catttaggaataagtgaatacttcactgagattaacactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaata |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5276433 |
catttaggaataagtgaatacttcactgagattaacactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaata |
5276334 |
T |
|
| Q |
354 |
aggcttcacatggttgcaacaatgtttgccctccaaacatgtgcaaggtatatttatttatttttagtgtttttggtctct |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
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|
| T |
5276333 |
aggcttcacatggttgcaacaatgtttgccctccaaacatgtgcaaggtatatatattt-ttttgggtgtttttggtctct |
5276254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 80 - 371
Target Start/End: Original strand, 5249933 - 5250224
Alignment:
| Q |
80 |
atgatgatggaatttcattcaaatgctgtaaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaat |
179 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
5249933 |
atgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaat |
5250032 |
T |
|
| Q |
180 |
cagctcatgctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcac |
279 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||| |||| |||||||||||||||||||| |
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|
| T |
5250033 |
cagcacatgcattagggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcac |
5250132 |
T |
|
| Q |
280 |
tgagattaacactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5250133 |
tgagattaacactaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
5250224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 52 - 405
Target Start/End: Original strand, 5269125 - 5269475
Alignment:
| Q |
52 |
tgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatgctgtaaccattgaagagattgaaaaggttcttcaaaggattccaatt |
151 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||| |||||||||||| || || ||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
5269125 |
tgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaatt |
5269224 |
T |
|
| Q |
152 |
catcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttga |
251 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||| | ||| |||||| || ||||||| |
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|
| T |
5269225 |
aatcacagaataatatctgctattaaatcagcttatgctttggggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttga |
5269324 |
T |
|
| Q |
252 |
agcatttaggaataagtgaatacttcactgagattaacactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaa |
351 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| | | | || ||||| ||||| ||||| |
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|
| T |
5269325 |
agcatttgggaattagtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaa |
5269424 |
T |
|
| Q |
352 |
taaggcttcacatggttgcaacaatgtttgccctccaaacatgtgcaaggtata |
405 |
Q |
| |
|
|| ||||| |||||||| || | |||| || |||||||||||||||||||| |
|
|
| T |
5269425 |
caaagcttctcatggttg---cactctttgtcccccaaacatgtgcaaggtata |
5269475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 165 - 397
Target Start/End: Original strand, 14944396 - 14944624
Alignment:
| Q |
165 |
tacctgcaattaaatcagctcatgctttagggtgtgatttgagg-attgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaa |
263 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14944396 |
tacctgcaattaaatcagcacatgctttagggtgtgatttgagttattgtgagcgatgccaatgtgttttacattgaaactattttgaagcatttgggaa |
14944495 |
T |
|
| Q |
264 |
taagtgaata-cttcactgagattaacactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcac |
362 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||| ||||||||||||| || |||| ||| | ||||| ||||| ||||| ||||| |||||||||| |
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|
| T |
14944496 |
taagtgaatatcttctcagagattaacactaatcttggttatgttaatgaagaaggtagactaagaatgtcaccataccac---ttcaacaaggcttcac |
14944592 |
T |
|
| Q |
363 |
atggttgcaacaatgtttgccctccaaacatgtgc |
397 |
Q |
| |
|
||||||||| | ||| |||||||||||||||| |
|
|
| T |
14944593 |
atggttgcac---tctttaccctccaaacatgtgc |
14944624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 14944321 - 14944357
Alignment:
| Q |
52 |
tgttttggttttgaaattataggacaaaatgatgatg |
88 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14944321 |
tgttttggttttggaattataggacaagatgatgatg |
14944357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 355
Target Start/End: Complemental strand, 43110420 - 43110263
Alignment:
| Q |
195 |
ggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||||| || ||| |||||||||| || || || |||| ||| | |||||||||||||| |
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|
| T |
43110420 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaa |
43110321 |
T |
|
| Q |
295 |
tcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataag |
355 |
Q |
| |
|
||| ||||||||| || ||||||| | ||||||| |||||||||||| |||||||| |
|
|
| T |
43110320 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
43110263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 332
Target Start/End: Complemental strand, 26314884 - 26314747
Alignment:
| Q |
195 |
ggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |||||| || ||| | ||||| || ||||| || |||| ||| | |||||||||||||| |
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|
| T |
26314884 |
ggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaa |
26314785 |
T |
|
| Q |
295 |
tcctggttatgttaatcaacaaggaagagttagaattt |
332 |
Q |
| |
|
||| ||||||||| || || |||||||| | ||||||| |
|
|
| T |
26314784 |
tccaggttatgttgatgaagaaggaagattgagaattt |
26314747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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