View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8557_high_10 (Length: 331)

Name: NF8557_high_10
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8557_high_10
NF8557_high_10
[»] chr1 (5 HSPs)
chr1 (54-229)||(24552532-24552707)
chr1 (54-175)||(24562605-24562726)
chr1 (268-303)||(473036-473071)
chr1 (269-307)||(46423151-46423189)
chr1 (268-314)||(47498987-47499033)
[»] chr8 (2 HSPs)
chr8 (266-306)||(34236040-34236080)
chr8 (267-300)||(18133555-18133588)
[»] chr5 (2 HSPs)
chr5 (268-307)||(12433531-12433570)
chr5 (263-303)||(13697924-13697964)
[»] chr2 (5 HSPs)
chr2 (267-314)||(4606860-4606907)
chr2 (267-314)||(41812228-41812275)
chr2 (266-303)||(7043877-7043914)
chr2 (267-307)||(26143791-26143831)
chr2 (266-298)||(39659678-39659710)
[»] scaffold0050 (1 HSPs)
scaffold0050 (269-309)||(58475-58515)
[»] chr7 (2 HSPs)
chr7 (271-307)||(28900760-28900796)
chr7 (267-307)||(46139821-46139861)
[»] chr4 (2 HSPs)
chr4 (266-314)||(4212810-4212858)
chr4 (266-306)||(34213730-34213770)
[»] chr3 (4 HSPs)
chr3 (268-304)||(944363-944399)
chr3 (267-307)||(26990641-26990681)
chr3 (271-307)||(34610957-34610993)
chr3 (266-298)||(46886857-46886889)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 24552707 - 24552532
Alignment:
Q  54 gaagataagcagtacttgtagttgcagaaatggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24552707 gaagataagcagtacttgtagttgcagaaatggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 24552608  T
Q  154 atagctagctttcttatctgtggcaaacatacaagataatcaggtaatatagtttattcaataaaagcaacactaa 229  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||    
T  24552607 atagctagctttcttatctgtggcatacatagaagataattaagtaatatagtttattcaataaaagcaacactaa 24552532  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 24562726 - 24562605
Alignment:
Q  54 gaagataagcagtacttgtagttgcagaaatggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 153  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||| ||||||| | || |||    
T  24562726 gaagataagcattacttgtatttgcagaaatggtgaatgtagcaggttggcctcttgcaacggggtcaggagatatttgaactcctttaacttgaacatc 24562627  T
Q  154 atagctagctttcttatctgtg 175  Q
    ||||||| |||||||| |||||    
T  24562626 atagctatctttcttacctgtg 24562605  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 473036 - 473071
Alignment:
Q  268 ctgtttggataaacaacttatatgcagcttacaaca 303  Q
    ||||||||||||||||||||| ||||||||||||||    
T  473036 ctgtttggataaacaacttatttgcagcttacaaca 473071  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 46423151 - 46423189
Alignment:
Q  269 tgtttggataaacaacttatatgcagcttacaacacaag 307  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  46423151 tgtttggataaacaacttatttgcagcttataacacaag 46423189  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 47499033 - 47498987
Alignment:
Q  268 ctgtttggataaacaacttatatgcagcttacaacacaagtgattat 314  Q
    ||||||||||||||||||||| ||||||||| | |||||||| ||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttat 47498987  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 34236040 - 34236080
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagcttacaacacaa 306  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  34236040 tcctgtttggataaacaacttatttgcagcttataacacaa 34236080  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 18133555 - 18133588
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttaca 300  Q
    |||||||||||||||||||||| |||||||||||    
T  18133555 cctgtttggataaacaacttatttgcagcttaca 18133588  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 12433570 - 12433531
Alignment:
Q  268 ctgtttggataaacaacttatatgcagcttacaacacaag 307  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  12433570 ctgtttggataaacaacttatttgcagcttataacacaag 12433531  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 13697964 - 13697924
Alignment:
Q  263 tattcctgtttggataaacaacttatatgcagcttacaaca 303  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  13697964 tattactgtttggataaacaacttatttgcagcttataaca 13697924  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 4606860 - 4606907
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttacaacacaagtgattat 314  Q
    ||||||||||||||||||||||  |||||||| |||||||||| ||||    
T  4606860 cctgtttggataaacaacttattcgcagcttataacacaagtgcttat 4606907  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 41812275 - 41812228
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttacaacacaagtgattat 314  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||||    
T  41812275 cctgtttggataaacaacttatttgcagtttatagcacaagtgattat 41812228  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 7043914 - 7043877
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagcttacaaca 303  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  7043914 tcctgtttggataaacaacttatttgcagcttataaca 7043877  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 26143831 - 26143791
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttacaacacaag 307  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  26143831 cctgtttggataaacaacttatttgcagtttataacacaag 26143791  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 39659710 - 39659678
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagctta 298  Q
    ||||||||||||||||||||||| |||||||||    
T  39659710 tcctgtttggataaacaacttatttgcagctta 39659678  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 58475 - 58515
Alignment:
Q  269 tgtttggataaacaacttatatgcagcttacaacacaagtg 309  Q
    |||||||||||||||||||| ||||||||| | ||||||||    
T  58475 tgtttggataaacaacttatttgcagcttagagcacaagtg 58515  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 28900760 - 28900796
Alignment:
Q  271 tttggataaacaacttatatgcagcttacaacacaag 307  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  28900760 tttggataaacaacttatttgcagcttataacacaag 28900796  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 46139821 - 46139861
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttacaacacaag 307  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  46139821 cctgtttggttaaacaacttatttgcagcttataacacaag 46139861  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 4212810 - 4212858
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattat 314  Q
    ||||||||||||||||||||||| | ||||||| | |||||| ||||||    
T  4212810 tcctgtttggataaacaacttattttcagcttatagcacaagcgattat 4212858  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 34213770 - 34213730
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagcttacaacacaa 306  Q
    |||||||||||||| |||||||| ||||||||| |||||||    
T  34213770 tcctgtttggataagcaacttatttgcagcttataacacaa 34213730  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 944363 - 944399
Alignment:
Q  268 ctgtttggataaacaacttatatgcagcttacaacac 304  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  944363 ctgtttggataaacaacttatttgcagcttataacac 944399  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 26990681 - 26990641
Alignment:
Q  267 cctgtttggataaacaacttatatgcagcttacaacacaag 307  Q
    ||||||||||| ||||||||||||||| |||| ||||||||    
T  26990681 cctgtttggatcaacaacttatatgcaacttataacacaag 26990641  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 34610993 - 34610957
Alignment:
Q  271 tttggataaacaacttatatgcagcttacaacacaag 307  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  34610993 tttggataaacaacttatctgcagcttataacacaag 34610957  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 46886889 - 46886857
Alignment:
Q  266 tcctgtttggataaacaacttatatgcagctta 298  Q
    ||||||||||||||||||||||| |||||||||    
T  46886889 tcctgtttggataaacaacttatttgcagctta 46886857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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