View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_high_20 (Length: 240)
Name: NF8557_high_20
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 4033882 - 4033739
Alignment:
| Q |
17 |
atataggtgataaaaattcgcttgggttggtctgatactattgacttaaaattttggagtgtgcttctctttaaggtcttaagtttgactctctcatatg |
116 |
Q |
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| T |
4033882 |
atataggtgataaaaactcgcttgggttggtttgatactattgacttgaaactttggagtgtgcttctctttaaggtcttaagtttgactctctcatatg |
4033783 |
T |
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| Q |
117 |
ttaatttggttgaactaatttaacttcttaaaaaaatataggag |
160 |
Q |
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| T |
4033782 |
tcaatttggttgaactaatttaacttcttaaaaaaatataggag |
4033739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 40286894 - 40286811
Alignment:
| Q |
70 |
ttggagtgtgcttctctttaaggtcttaagtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaat |
153 |
Q |
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| T |
40286894 |
ttggagtgtggtcctcctcaagatcttatgtttcattctctccaatgttaatttggatggactaatttagcttcttaaaaaaat |
40286811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 3260186 - 3260152
Alignment:
| Q |
119 |
aatttggttgaactaatttaacttcttaaaaaaat |
153 |
Q |
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| T |
3260186 |
aatttgattgaactaatttaacttcttaaaaaaat |
3260152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 36714266 - 36714230
Alignment:
| Q |
114 |
atgttaatttggttgaactaatttaacttcttaaaaa |
150 |
Q |
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| T |
36714266 |
atgttaatttggctgaactagtttaacttcttaaaaa |
36714230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 20286955 - 20286996
Alignment:
| Q |
113 |
tatgttaatttggttgaactaatttaacttcttaaaaaaata |
154 |
Q |
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| T |
20286955 |
tatgttaatttggatgagttaatttaacttcttaaaaaaata |
20286996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 35345818 - 35345871
Alignment:
| Q |
99 |
gtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaa |
152 |
Q |
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| T |
35345818 |
gtttgactctctccgatgtcaatttggatggactaatttatcttcttaaaaaaa |
35345871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 53496965 - 53496997
Alignment:
| Q |
119 |
aatttggttgaactaatttaacttcttaaaaaa |
151 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
53496965 |
aatttggttggactaatttaacttcttaaaaaa |
53496997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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