View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_1 (Length: 628)
Name: NF8557_low_1
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 245 - 607
Target Start/End: Complemental strand, 51105618 - 51105256
Alignment:
| Q |
245 |
gtaactgggccatacactttaagtatagagaaacgagaaatttgatgttcgaaactcaacccctatatattattgctcttacaactatcaactgaattat |
344 |
Q |
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| T |
51105618 |
gtaactgggccatacactttacgtataaagaaacgagaaatttgatgttcgaaactcatcccctatatattattgctcttacaactatcaactgaattat |
51105519 |
T |
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| Q |
345 |
actttttgaacatctgaaaagatacttaattatataaactccaaacatctaatattttaatattatccttcaatctaaagtttattaagctttaaactag |
444 |
Q |
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| T |
51105518 |
actttttgaatatctgaaaagatacttaattatataaactccaaacatctaatattttaatattatccttcaagctaaagtttattaagttttaaactag |
51105419 |
T |
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| Q |
445 |
tttcaaacatattcatacactcaacaactaaacaacatgagtaatacatgactccaaacaaactacaaacaacttccataatttaaaaatcaaatctctt |
544 |
Q |
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| T |
51105418 |
ttttaaacatattcatacactcaacaactaaacaacatgagtaatatatgactccaaacaaactacaaacaacttccataatttaaaaatcaaatctctt |
51105319 |
T |
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| Q |
545 |
taaacaaagagaactttttcacttattcataagtaaaatgtggctcatgtgttttgcacagtg |
607 |
Q |
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| T |
51105318 |
taaacaaagagaactttttcacttattcataagtaaaatgtggctcatgtgttttgcacagtg |
51105256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 51105878 - 51105747
Alignment:
| Q |
16 |
tatacaaatgataacttatattagttgaaggtgtaaaacattttaagcggacatgtttgtgataaatgagtttggatctcaaaagctattttagaggaac |
115 |
Q |
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| T |
51105878 |
tatacaaatgataacttatattagttgaaggtgtaaaacattttaagctgacatgtttgtgataaatgagtttgaatctcaaaagctattttagaggaac |
51105779 |
T |
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| Q |
116 |
atatatttatacacttaacaactcaaaaattt |
147 |
Q |
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| T |
51105778 |
atatatttatacacttaacaactcaaaaattt |
51105747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 51105728 - 51105684
Alignment:
| Q |
135 |
aactcaaaaatttattatctaaaacattctctcaaactcgtgatg |
179 |
Q |
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| T |
51105728 |
aactcaaaaaattattatctaaaacattctctcaaactcgtgatg |
51105684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 526
Target Start/End: Original strand, 16442637 - 16442669
Alignment:
| Q |
494 |
gactccaaacaaactacaaacaacttccataat |
526 |
Q |
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| T |
16442637 |
gactccaaacaaactacaaacaacttcaataat |
16442669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 44084784 - 44084752
Alignment:
| Q |
494 |
gactccaaacaaactacaaacaacttccataat |
526 |
Q |
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| T |
44084784 |
gactccaaacaaactacaaacaacttcaataat |
44084752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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