View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8557_low_10 (Length: 378)

Name: NF8557_low_10
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8557_low_10
NF8557_low_10
[»] chr4 (4 HSPs)
chr4 (14-361)||(55851799-55852142)
chr4 (271-355)||(55849467-55849551)
chr4 (127-225)||(5440946-5441044)
chr4 (206-234)||(55849418-55849446)
[»] chr6 (9 HSPs)
chr6 (271-357)||(9664679-9664765)
chr6 (131-231)||(6825433-6825532)
chr6 (151-234)||(787410-787493)
chr6 (271-349)||(3074956-3075035)
chr6 (271-357)||(787304-787390)
chr6 (273-334)||(21146869-21146929)
chr6 (126-228)||(8655750-8655848)
chr6 (129-172)||(8837141-8837183)
chr6 (129-189)||(23343960-23344020)
[»] chr1 (8 HSPs)
chr1 (271-357)||(20225538-20225624)
chr1 (129-229)||(18705630-18705730)
chr1 (271-339)||(20226869-20226937)
chr1 (129-232)||(29849914-29850012)
chr1 (120-234)||(20226735-20226847)
chr1 (131-231)||(35270027-35270127)
chr1 (130-220)||(9908105-9908194)
chr1 (195-232)||(26231106-26231143)
[»] chr5 (8 HSPs)
chr5 (120-231)||(41951643-41951755)
chr5 (144-231)||(21254262-21254348)
chr5 (271-332)||(27172873-27172934)
chr5 (131-189)||(30518609-30518667)
chr5 (131-189)||(30558949-30559007)
chr5 (153-220)||(35309093-35309160)
chr5 (195-231)||(26873149-26873185)
chr5 (45-82)||(41951230-41951267)
[»] chr3 (10 HSPs)
chr3 (271-357)||(24595242-24595329)
chr3 (271-357)||(27462144-27462230)
chr3 (273-357)||(20871351-20871436)
chr3 (271-357)||(20868713-20868800)
chr3 (273-356)||(51308829-51308912)
chr3 (142-220)||(52737764-52737842)
chr3 (151-229)||(20868825-20868902)
chr3 (151-229)||(51306477-51306555)
chr3 (273-356)||(51306368-51306450)
chr3 (129-187)||(4602423-4602481)
[»] chr2 (3 HSPs)
chr2 (130-231)||(24038377-24038480)
chr2 (273-355)||(26608055-26608138)
chr2 (126-166)||(89678-89718)
[»] scaffold0001 (1 HSPs)
scaffold0001 (131-225)||(146645-146738)
[»] chr8 (11 HSPs)
chr8 (143-231)||(7277686-7277773)
chr8 (271-357)||(35416136-35416222)
chr8 (153-229)||(3788446-3788522)
chr8 (131-220)||(4676285-4676375)
chr8 (178-228)||(35416060-35416110)
chr8 (141-186)||(39357-39402)
chr8 (273-314)||(3788550-3788591)
chr8 (271-357)||(369300-369386)
chr8 (273-307)||(3785840-3785874)
chr8 (272-334)||(31909147-31909208)
chr8 (320-357)||(12062803-12062840)
[»] chr7 (5 HSPs)
chr7 (130-231)||(41830314-41830417)
chr7 (130-220)||(34510821-34510910)
chr7 (273-334)||(2577039-2577098)
chr7 (272-311)||(9457676-9457715)
chr7 (120-220)||(36647400-36647500)
[»] scaffold1412 (1 HSPs)
scaffold1412 (131-197)||(1786-1851)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 55851799 - 55852142
Alignment:
Q  14 atcatagactgcaccagaaacaaagattcgaatccaaatcaaggaattggaatcgaattgtgaatcctagaacaaaaatcaagaaatggagacacgcatc 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55851799 atcatagactgaaccagaaacaaagattcgaatccaaatcaaggaattggaatcgaattgtgaatcctagaacaaaaatcaagaaatcgagacacgcatc 55851898  T
Q  114 ttctggaaattaaagatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55851899 ttctggaaattaaagatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttagg 55851998  T
Q  214 aaacatggcatccatggatatnnnnnnnnnnnnnnnaaagcttggaaaaactattgtactattgtattgatgatagttgaaatgatacaagaatggaaaa 313  Q
    |||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55851999 aaacatggcatccatggatat----agagagagagaaaagcttggaaaaactattgtactattgtattgatgatagttgaaatgatacaagaatgtaaaa 55852094  T
Q  314 gataactacaaatgagtcaaccatgttagttatatagtaactaatcta 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55852095 gataactacaaatgagtcaaccatgttagttatatagtaactaatcta 55852142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 55849467 - 55849551
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaact 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||    
T  55849467 actattgtattgatgatagttgaaatgatacaagaatggaaaagataggtacaaatgagtcaaccatgtgacttatatagtaact 55849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 5441044 - 5440946
Alignment:
Q  127 agatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatc 225  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||| |  |||||||||   | |||||||||| ||||||||||||||||||||    
T  5441044 agatgagaaaattggattttctcgagaaaatgcaggggaaaatatccttcaaaatggataccaggttagctctgataccatgttaggaaacatggcatc 5440946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 55849418 - 55849446
Alignment:
Q  206 atgttaggaaacatggcatccatggatat 234  Q
    |||||||||||||||||||||||||||||    
T  55849418 atgttaggaaacatggcatccatggatat 55849446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 9664679 - 9664765
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||| | |||||||||||||||    
T  9664679 actattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagtcaaccatgtgacttatatagtaactaa 9664765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 6825433 - 6825532
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatgg 230  Q
    |||||||||| |||||||| |||||||||||||||||| ||  ||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  6825433 gagaaaattgaattttctcgagaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccatgg 6825531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 787493 - 787410
Alignment:
Q  151 agaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatggatat 234  Q
    |||||||||||||||||||||| ||| ||||||||||||   |||||||||||| ||||||||||||||| ||||||| |||||    
T  787493 agaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatat 787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 3075035 - 3074956
Alignment:
Q  271 actattgtatt-gatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatata 349  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  3075035 actattgtatttgatgatagttgaaatgatataagaatggaaaagatagatacaaatgagacaaccatgtgatttatata 3074956  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 787390 - 787304
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||   |||||||||||||| ||| | | |||||||||||||||    
T  787390 actattgtattgatgatacttgaaatgatacaagaatgagaaagatcggtacaaatgagtcaatcatatgacttatatagtaactaa 787304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 21146869 - 21146929
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaac 334  Q
    |||||||||||  |||||||||||||||||||||| ||||||| |  |||||||||||||||    
T  21146869 tattgtattgaaaatagttgaaatgatacaagaat-gaaaagagaggtacaaatgagtcaac 21146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 8655750 - 8655848
Alignment:
Q  126 aagatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatc 225  Q
    |||||||||||||  ||||||||| ||||||||||  |||||||  | ||| |||||| |||||     |||||||||| ||||||||||||||||||||    
T  8655750 aagatgagaaaat--gattttctcgagaaaatgcaagggaaaat--ccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatc 8655845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 8837141 - 8837183
Alignment:
Q  129 atgagaaaattggattttctctagaaaatgcagcggaaaatatc 172  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  8837141 atgagaaaattg-attttctcgagaaaatgcagcggaaaatatc 8837183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 23344020 - 23343960
Alignment:
Q  129 atgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggatacca 189  Q
    |||||||||||  | ||| || ||||| |||||||||||||||| ||| ||||||||||||    
T  23344020 atgagaaaattaaaatttttcaagaaagtgcagcggaaaatatccttcaaggtggatacca 23343960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 20225538 - 20225624
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| | |||||||||||||||    
T  20225538 actattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttatatagtaactaa 20225624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 18705630 - 18705730
Alignment:
Q  129 atgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccat 228  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||   | |||||||||| ||||||| |||||||||||||||    
T  18705630 atgagaaaattgaattttctctagaaaatgcagcggaaaaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccat 18705729  T
Q  229 g 229  Q
    |    
T  18705730 g 18705730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 20226869 - 20226937
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgt 339  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||  |||||| |||||||||||||    
T  20226869 actattgtattgatgataattgaaatgatacaagaatgaaaaagataggtacaaaagagtcaaccatgt 20226937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 29849914 - 29850012
Alignment:
Q  129 atgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccat 228  Q
    |||||||||||| ||||||||||||||||  ||| |||||| || ||| |||||||||||| |  ||||||||||| |||||| ||||||||||||||||    
T  29849914 atgagaaaattgaattttctctagaaaat--agcagaaaat-tccttcaaggtggataccatt--tgctctgataccatgttatgaaacatggcatccat 29850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 20226735 - 20226847
Alignment:
Q  120 aaattaaagatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacat 219  Q
    ||||| ||||||||| ||||  |||||||| |||||||||||||||||  ||| ||| ||| ||||||||   | |||||||||| |||||||||||||     
T  20226735 aaattgaagatgagagaattaaattttctcaagaaaatgcagcggaaa--atccttcaaggaggataccagattagctctgataccatgttaggaaacac 20226832  T
Q  220 ggcatccatggatat 234  Q
    ||||| |||||||||    
T  20226833 ggcattcatggatat 20226847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 35270027 - 35270127
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggatacc-aatcttgctctgatacgatgttaggaaacatggcatccatg 229  Q
    |||||||||| |||||||  |||||||||||||||||||||||||| |||||||| || || |  |||||||||| ||||||  |||||| |||||||||    
T  35270027 gagaaaattgaattttcttaagaaaatgcagcggaaaatatcattcaaggtggatgccaaaccaggctctgataccatgttataaaacat-gcatccatg 35270125  T
Q  230 ga 231  Q
    ||    
T  35270126 ga 35270127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 9908105 - 9908194
Alignment:
Q  130 tgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatg 220  Q
    ||||||||||  |||||||| ||||| ||||||||||||| || ||| ||||||||||||   | |||||||||| |||||||||||||||    
T  9908105 tgagaaaattttattttctcaagaaagtgcagcggaaaatttc-ttcaaggtggataccagattagctctgataccatgttaggaaacatg 9908194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 26231106 - 26231143
Alignment:
Q  195 gctctgatacgatgttaggaaacatggcatccatggat 232  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  26231106 gctctgatactatgttatgaaacatggcatccatggat 26231143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 41951643 - 41951755
Alignment:
Q  120 aaattaaa-gatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaaca 218  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||| ||| ||||||||   | ||||| |||| |||||||||||||    
T  41951643 aaattaaatgatgagaaaattagattttctcgagaaaatgcagcggaaaatatccttcaaggcggataccagattagctctaataccatgttaggaaaca 41951742  T
Q  219 tggcatccatgga 231  Q
    |||||||||||||    
T  41951743 tggcatccatgga 41951755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 21254348 - 21254262
Alignment:
Q  144 tttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatgga 231  Q
    |||||| |||||||||||||||||| ||  ||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  21254348 tttctcgagaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccatgga 21254262  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 27172873 - 27172934
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtca 332  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  27172873 actattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtca 27172934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 30518609 - 30518667
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggatacca 189  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||    
T  30518609 gagaaaattggattttctcaagaaaatgcagcggaaaatatcttttaaggtggatacca 30518667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 30558949 - 30559007
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggatacca 189  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||    
T  30558949 gagaaaattggattttctcaagaaaatgcagcggaaaatatcttttaaggtggatacca 30559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 35309093 - 35309160
Alignment:
Q  153 aaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatg 220  Q
    |||||||||||||||||||| ||| ||||||||||||   | |||||||||| |||||||||||||||    
T  35309093 aaaatgcagcggaaaatatccttcaaggtggataccagattagctctgataccatgttaggaaacatg 35309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 26873149 - 26873185
Alignment:
Q  195 gctctgatacgatgttaggaaacatggcatccatgga 231  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccatgga 26873185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 41951230 - 41951267
Alignment:
Q  45 atccaaatcaaggaattggaatcgaattgtgaatccta 82  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  41951230 atccaaatcaaggaattggaatcgaatcgtgaaaccta 41951267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 24595329 - 24595242
Alignment:
Q  271 actattgtattgatgatagttgaaa-tgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||| | |||||||||||||||    
T  24595329 actattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtacaaatgagtcaaccatgtgacttatatagtaactaa 24595242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 27462230 - 27462144
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||| | | |||||||||||||||    
T  27462230 actattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagtcaaccatatgacttatatagtaactaa 27462144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 20871436 - 20871351
Alignment:
Q  273 tattgtattgatgatagttgaaa-tgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||  |||||||||||||||||||| | |||||||||||||||    
T  20871436 tattgtattgatgatagttgaaaataatacaagaatgaaaaagataggtacaaatgagtcaaccatgtgacttatatagtaactaa 20871351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 20868800 - 20868713
Alignment:
Q  271 actattgtattgatgatagttgaa-atgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||  ||||||| |||||||||||| | |||||||||||||||    
T  20868800 actattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataagtcaaccatgtgacttatatagtaactaa 20868713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 51308912 - 51308829
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaacta 356  Q
    |||||||||||| ||||||||||||||||||||||  || |||| | |||||||||||||||||||| | ||||||||||||||    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaacta 51308829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 52737764 - 52737842
Alignment:
Q  142 attttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatg 220  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||   |||||||||||| |||||||||||||||    
T  52737764 attttctcaagaaaatgcagcggaaaatatccttcaaggtggataccagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 20868902 - 20868825
Alignment:
Q  151 agaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatg 229  Q
    ||||||||||||||||||| |  ||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  20868902 agaaaatgcagcggaaaat-tgtttcaaggtggataccaatcatgctctgataccatgttgggaaacatggcatccatg 20868825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 51306555 - 51306477
Alignment:
Q  151 agaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatg 229  Q
    |||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||| |||||  |||||||| ||||||||    
T  51306555 agaaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatgacatccatg 51306477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 51306450 - 51306368
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaacta 356  Q
    |||||||||||| |||||| ||||||||||| |||  || |||| | ||  |||||||||||||| | ||||||||||||||||    
T  51306450 tattgtattgataatagttaaaatgatacaaaaataaaagagattagta-taatgagtcaaccatataagttatatagtaacta 51306368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 4602481 - 4602423
Alignment:
Q  129 atgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggatac 187  Q
    ||||||||| | ||||||||| ||||||||||||||||||  || ||| ||||||||||    
T  4602481 atgagaaaaattgattttctcgagaaaatgcagcggaaaaattccttcaaggtggatac 4602423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 24038480 - 24038377
Alignment:
Q  130 tgagaaaatt-ggattttctct-agaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatcca 227  Q
    |||||||||| ||||||||||  |||||||||||||||||||||| ||| ||||||||||||| |  |||||||||| ||||||| ||||||||||||||    
T  24038480 tgagaaaatttggattttctcagagaaaatgcagcggaaaatatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatcca 24038381  T
Q  228 tgga 231  Q
    ||||    
T  24038380 tgga 24038377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 26608055 - 26608138
Alignment:
Q  273 tattgtattgatgatagttgaaa-tgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaact 355  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||  |||| ||||||||||| ||| | |||||||||||||    
T  26608055 tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtacagatgagtcaaccttgtgacttatatagtaact 26608138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 89678 - 89718
Alignment:
Q  126 aagatgagaaaattggattttctctagaaaatgcagcggaa 166  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  89678 aagatgagaaaattggattttctctaaaaagtgcagcggaa 89718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 146645 - 146738
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatc 225  Q
    |||||||||| |||||||| |||||||||||||||||| ||  ||| ||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  146645 gagaaaattgaattttctcgagaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctttgataccatgttaggaaacatggcatc 146738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 7277686 - 7277773
Alignment:
Q  143 ttttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatgga 231  Q
    ||||||| |||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  7277686 ttttctcgagaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctgataccatgttaggaaacatggtatccatgga 7277773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 35416136 - 35416222
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    ||||||||||| ||| ||||||||||||||||| |||| | ||||||| |||||||||||||||||||| | ||||||||| |||||    
T  35416136 actattgtattaatggtagttgaaatgatacaataatgaagaagataagtacaaatgagtcaaccatgtgacttatatagtcactaa 35416222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 3788446 - 3788522
Alignment:
Q  153 aaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatg 229  Q
    |||||||||||||||| ||  ||| ||||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3788446 aaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatggcatccatg 3788522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 4676375 - 4676285
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcgg-aaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatg 220  Q
    |||||||||| |||||||| |||||||||||||| |||||||| ||| ||||||||||||   | |||||||||| || ||||||||||||    
T  4676375 gagaaaattgtattttctcaagaaaatgcagcggaaaaatatccttcaaggtggataccaggttagctctgataccatattaggaaacatg 4676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 35416060 - 35416110
Alignment:
Q  178 aggtggataccaatcttgctctgatacgatgttaggaaacatggcatccat 228  Q
    ||||||||||||||  ||||||||||| |||||| ||||||||||||||||    
T  35416060 aggtggataccaattatgctctgataccatgttaagaaacatggcatccat 35416110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 39402 - 39357
Alignment:
Q  141 gattttctctagaaaatgcagcggaaaatatcattcgaggtggata 186  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||    
T  39402 gattttctcgagaaaatgcagcggaaaatatccttcaaggtggata 39357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 3788550 - 3788591
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaatggaaaag 314  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  3788550 tattgtattgataatagttgaaatgatacaagaatgaaaaag 3788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 369386 - 369300
Alignment:
Q  271 actattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    ||||||||||||||||||||||||| ||||||| |||  || ||||   ||||||| || ||||||| | | |||| ||||||||||    
T  369386 actattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattagccaaccatatgacttatttagtaactaa 369300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 3785840 - 3785874
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaat 307  Q
    |||||||||||| ||||||||||||||||||||||    
T  3785840 tattgtattgataatagttgaaatgatacaagaat 3785874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 31909147 - 31909208
Alignment:
Q  272 ctattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaac 334  Q
    |||||||||||||||||||||||| ||||||| |||| || ||| |  |||||||||||||||    
T  31909147 ctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaac 31909208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 12062840 - 12062803
Alignment:
Q  320 tacaaatgagtcaaccatgttagttatatagtaactaa 357  Q
    |||||||||||||||||||| | |||||||||||||||    
T  12062840 tacaaatgagtcaaccatgtgacttatatagtaactaa 12062803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 41830417 - 41830314
Alignment:
Q  130 tgagaaaatt-ggattttctct-agaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatcca 227  Q
    |||||||||| ||||||||||  |||||||||||||||||||||| ||| |||||||||||||  | ||||| |||| ||||||||||||||| ||||||    
T  41830417 tgagaaaatttggattttctcagagaaaatgcagcggaaaatatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatcca 41830318  T
Q  228 tgga 231  Q
    ||||    
T  41830317 tgga 41830314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 34510910 - 34510821
Alignment:
Q  130 tgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatg 220  Q
    ||||||||| | |||||||| ||||||||||||||||||| || ||| ||||||||||||   | |||||||||| |||||||||||||||    
T  34510910 tgagaaaatagaattttctcgagaaaatgcagcggaaaat-tccttcaaggtggataccagattagctctgataccatgttaggaaacatg 34510821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 2577098 - 2577039
Alignment:
Q  273 tattgtattgatgatagttgaaatgatacaagaatggaaaagataactacaaatgagtcaac 334  Q
    |||||||||||| ||||||||||||||||||||||| |||||  |  |||||||||||||||    
T  2577098 tattgtattgataatagttgaaatgatacaagaatgaaaaagtga--tacaaatgagtcaac 2577039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 9457715 - 9457676
Alignment:
Q  272 ctattgtattgatgatagttgaaatgatacaagaatggaa 311  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  9457715 ctattgtattgatgatagttaaaatgatacaaaaatggaa 9457676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 36647400 - 36647500
Alignment:
Q  120 aaattaaagatgagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacat 219  Q
    ||||| |||||||||||| |   ||||||| | |||||||||||||||||||| ||| || || ||||||   | |||||||||| || |||| ||||||    
T  36647400 aaattgaagatgagaaaaataatttttctcaaaaaaatgcagcggaaaatatccttcaagatgaataccagattagctctgataccatattagaaaacat 36647499  T
Q  220 g 220  Q
    |    
T  36647500 g 36647500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 1786 - 1851
Alignment:
Q  131 gagaaaattggattttctctagaaaatgcagcggaaaatatcattcgaggtggataccaatcttgct 197  Q
    |||||||||| |||||||| |||||||||||||||||| ||  ||| ||||||||||||||| ||||    
T  1786 gagaaaattgaattttctcgagaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgct 1851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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