View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_12 (Length: 359)
Name: NF8557_low_12
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 55851444 - 55851802
Alignment:
| Q |
1 |
aaaccagaagcaacgaactctgaatcaaccatcgcaacaagttctgacaagcaaaccacaagaatcatataccgaattgtagtatcagatgaaagacgaa |
100 |
Q |
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| T |
55851444 |
aaaccagaagcaacgaactctgaatcaaccatcgcaacaagttctgacaagcaaaccacaagaatcatataccgaattgtagtatcagatgaaagacgaa |
55851543 |
T |
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| Q |
101 |
ttcacagacacagaaaatagcaaagaaatgtgaaacggaatggattagagaacaatgaaaccctagaaattgggggaaaatgtgagaacaaaatcgaacc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55851544 |
ttcacagacacagaaaatagcaaagaaacgtgaaacggaatggattagagaacaatgaaaccctagaaattgggggaaaatgtgagaacaaaatcgaacc |
55851643 |
T |
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| Q |
201 |
aatttgggaacataatctctatcgagagaacaaaaggacgcaacaaggaatcgaaagattcagaaactgaaaatttcgatctataaaggattcgaacatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55851644 |
aatttgggaacataatctctatcgagagaacaaaaggatgcaacaaggaatcgaaagattcagaaactgaaaattttgatctataaaggattcgaacatg |
55851743 |
T |
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| Q |
301 |
gaattagaattgagaccagaactagaaaatgacaattccaatcaagagaacaaaaatca |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55851744 |
gaattagaattgagaccagaactagaaaatgacaattccaatcaagagaacaaaaatca |
55851802 |
T |
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