View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_14 (Length: 337)
Name: NF8557_low_14
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 2588688 - 2588386
Alignment:
| Q |
16 |
agaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacatgatgataaaggttttcctagattgtgctcatcacattccacatca |
115 |
Q |
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| T |
2588688 |
agaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacatgatgataaaggtttttctagattgtgctcatcacattccacatca |
2588589 |
T |
|
| Q |
116 |
taatcatctgtttccacagacgcataactgctttcaccaacacaagaagaatttaagaatgattcaggatacatttctcttgccaatctttcttcataat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588588 |
taatcatctgtttccacagacgcataactgctttcaccaacacaagaagattttaagaatgattcaggatacatttctcttgccaatctttcttcataat |
2588489 |
T |
|
| Q |
216 |
caataacagcaagccaaatagctgtatccttagcagtgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatatttggaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588488 |
caataacagcaagccaaatagctgtatccttagcagtgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatatttggaga |
2588389 |
T |
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| Q |
316 |
cat |
318 |
Q |
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||| |
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| T |
2588388 |
cat |
2588386 |
T |
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