View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8557_low_19 (Length: 283)
Name: NF8557_low_19
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 40 - 268
Target Start/End: Original strand, 42901236 - 42901464
Alignment:
| Q |
40 |
taaacagaaagtgggaatttgctttgttatggagagtgtttggggttgggctcaagatttaagaaggctttggttcatcatcctggtatattttaccttt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42901236 |
taaacagaaagtgggaatttgctttgttatggagagtgtttggggttgggctcaagatttaagaaggctttggttcatcatcctggtatattttaccttt |
42901335 |
T |
|
| Q |
140 |
ctaataaaataaggactcagactgttgtgcttagggaggcttacagaaatgaatttcttgttaagaatcatccagtgatgggcatgagatattggtacat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42901336 |
ctaataaaataaggactcagactgttgtgcttagggaggcttacagaaatgaatttcttgttaagaatcatctagtgatgggcatgagatattggtacat |
42901435 |
T |
|
| Q |
240 |
tcacctcatgacaaaggtgtagaagcaac |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42901436 |
tcacctcatgacaaaggtgtagaagcaac |
42901464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 19385323 - 19385104
Alignment:
| Q |
43 |
acagaaagtgggaatttgctttgttatggagagtgtttggggttgggctcaagatttaagaaggctttggttcatcatcctggtatattttacctttcta |
142 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
19385323 |
acagaaagtgagaatttgatttgttatggagagtgtttggggttgggctcgagatttaagaaggccttggttcatcatcccggtatattttacctttcta |
19385224 |
T |
|
| Q |
143 |
ataaaataaggactcagactgttgtgcttagggaggcttacagaaatgaatttcttgttaagaatcatccagtgatgggcatgagatattggtacattca |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
19385223 |
ataaaataaggactcagactgctgtgcttagggaggcttacagaaatgaatttcttgttaagaatcatccagtgatgggtacgagatattggtacattca |
19385124 |
T |
|
| Q |
243 |
cctcatgacaaaggtgtaga |
262 |
Q |
| |
|
||||||||| |||| ||||| |
|
|
| T |
19385123 |
cctcatgaccaaggcgtaga |
19385104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University