View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_2 (Length: 613)
Name: NF8557_low_2
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 1451785 - 1451191
Alignment:
| Q |
1 |
aagaaagtcacattcaccattgatcaaccaaatcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaatttgaaagggattctcaaatgtt |
100 |
Q |
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| T |
1451785 |
aagaaagtcacattcaccattgatcaaccaaatcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaatttgaaaaggattctcaaatgtt |
1451686 |
T |
|
| Q |
101 |
cagtaacaagtaatgagaaagagttgaagaaagaaactattgagaccagctgtgaatgttcttcactacctccaaaatccttttgtggtttatgctttga |
200 |
Q |
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| T |
1451685 |
cagtaacaagtaatgagaaagagttgaagaaagaaactattgagaccagctgtgaatgttcttcactacctccaaaatccttttgtggtttatgctttga |
1451586 |
T |
|
| Q |
201 |
tttcatacaagactctgacattgttagaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatctaagcatgtggctgaccaagtaatccac |
300 |
Q |
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| T |
1451585 |
tttcatacaagactctgacatt-tttgaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatctaagcatgtggctgaccaagtaatccac |
1451487 |
T |
|
| Q |
301 |
aacataaagaatgtttattgtccaaatccaggctgttgcgtggagctgaagccacaacatttgcaacaca-tttgccgaaagaagttattggtcgatggg |
399 |
Q |
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| T |
1451486 |
aacataaagaatgtttattgtccaaatccaggctgttgcgtggagctaaagccacaacatttgcaacacattttgccgaaagaagttattggtcgatggg |
1451387 |
T |
|
| Q |
400 |
aatacgagtcttacattgcttggtggaatagtggataaggtagtgctggcggattgagatcagacggtccaaatttcaagtttaatagtgatttaccgtc |
499 |
Q |
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| T |
1451386 |
aatacgagtcttacattgcttggtggaattgtggataaggtagtgctggcggattgagatcagacggtccaaatttcaagtttaatagtgatttaccgtc |
1451287 |
T |
|
| Q |
500 |
ttttatatattgaggnnnnnnnnnnaatgtcgatacacaaatccagtctaggttttagttttatgattctataatctatacacatgctatgaatgtaa |
597 |
Q |
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| T |
1451286 |
ttttatatattgagg--ttttttttaatgtcgatacacaaatccagtctaggttttagttttatgattctataatctatacacatgctacgaatgtaa |
1451191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 173 - 428
Target Start/End: Complemental strand, 1455333 - 1455077
Alignment:
| Q |
173 |
caaaatccttttgtggtttatgctttgatttcatacaagactctgacattgttagaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatc |
272 |
Q |
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|||||||| |||||| |||||||| |||| || ||| ||| | | ||||| ||||||||| | ||||||||||| | ||||||| |||||||||||| |
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| T |
1455333 |
caaaatccatttgtgatttatgctatgatatcgtaccagatgccaatattgtcagaggaagtaccatatgcaatcatcagttttgtgccaattgtatatc |
1455234 |
T |
|
| Q |
273 |
taagcatgtggctgaccaagtaatccacaacataaagaatgtttattgtccaaatccaggctgttgcgtggagctgaagccacaacatttgcaacaca-t |
371 |
Q |
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||||||||||||||| ||| ||| ||| || |||||||| ||| |||||||||||| | |||| ||||||| ||||||||||| |||||||||| | | |
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| T |
1455233 |
taagcatgtggctgaacaactaagccaaaatataaagaaaatttgttgtccaaatcctgtctgtagcgtggaactgaagccacagtatttgcaacatatt |
1455134 |
T |
|
| Q |
372 |
ttgccgaaagaagttattggtcgatgggaatacgagtcttacattgcttggtggaat |
428 |
Q |
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| T |
1455133 |
ttgcctaaagaagtggttggtcgatgggaatacgagtcttacatggcttggtggaat |
1455077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 365
Target Start/End: Original strand, 736241 - 736433
Alignment:
| Q |
173 |
caaaatccttttgtggtttatgctttgatttcatacaagactctgacattgttagaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatc |
272 |
Q |
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||||||||||||||||| |||| |||||||| ||| ||| ||| ||||||||||| |||| | ||| || || || ||||||| ||||||||||| |
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| T |
736241 |
caaaatccttttgtggtgtatgttttgattttgtaccagagaatgatattgttagaggtagtggcacatgtaaccatccattttgtgctaattgtatatc |
736340 |
T |
|
| Q |
273 |
taagcatgtggctgaccaagtaatccacaacataaagaatgtttattgtccaaatccaggctgttgcgtggagctgaagccacaacatttgca |
365 |
Q |
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||| |||||||||| ||| ||| ||| | ||| | | || |||||||||||||| | |||| || |||| ||||||| ||||||||||| |
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| T |
736341 |
taatcatgtggctgcacaactaagccagagtgtaatggagtttaattgtccaaatccaagatgtttcgaggagttgaagccgcaacatttgca |
736433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 1455438 - 1455393
Alignment:
| Q |
32 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
77 |
Q |
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| T |
1455438 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
1455393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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