View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_20 (Length: 265)
Name: NF8557_low_20
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 51118596 - 51118849
Alignment:
| Q |
1 |
ttacaaaagcatagtcaataattttagatttagaaaattgcttcaagttaaggttgagattctacatttgatatctgctactccaatcattttaccaact |
100 |
Q |
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| T |
51118596 |
ttacaaaagcatagtcaataattttagatttagaaaattgcttcaagttaaggttgagattctacatttgatatctgctactccaatcattttaccaact |
51118695 |
T |
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| Q |
101 |
catcttaaagcattcaattctgttttttgttattgttttggtgaa-----tgctgttgtatgataagtgccaatgtttggaccgttgcttattgtgtgtt |
195 |
Q |
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| T |
51118696 |
catcttaaagcattcaattctgttttttgttattgttttgatgaatgctgtgctgttgtatgctaagtgccaatgtttggactgttgcttattgtgtgtt |
51118795 |
T |
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| Q |
196 |
gaatgtttgaaattttgtattatgaataccatggaaagcttgaatttgctttat |
249 |
Q |
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| T |
51118796 |
gaatgtttgaaattttgtattatgaataccatggaaagcttgaatttgctttat |
51118849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 51111708 - 51111804
Alignment:
| Q |
32 |
agaaaattgcttcaagttaaggttgagattctacatttgatatctgctactccaatcattttaccaactcatcttaaagcattcaattctgtttttt |
128 |
Q |
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| T |
51111708 |
agaaaactgcttcaaattaaggttgagagtctacatttgatatttgctactccagtcatttccccaactcattttaaagcattcaattctgtttttt |
51111804 |
T |
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