View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8557_low_21 (Length: 262)
Name: NF8557_low_21
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11159245 - 11159490
Alignment:
| Q |
1 |
aatttaaaaacaagttggcccaaaaacgttttttagctgcccataaccttttnnnnnnnctaaatagacatcttaaaataaacttgactttatttgtttt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11159245 |
aatttaaaatcaagttggcccaaaaacgttttttagctgcccataaccttttaaaaaaactaaatagacatcttaaaataaacttgactttatttgtttt |
11159344 |
T |
|
| Q |
101 |
aaaaatagtctgacctaacatgaatatgatttatgttgggtcacatatactcgtatcttgtagcctcttttatttaatccttacgatatgtgtcatcccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11159345 |
aaaaatagtctgacctaacatgaatatgatttatgttgggtttcatatactcgtatcttgtagcctcttttatttaatccttacgatatgtgtcatcccc |
11159444 |
T |
|
| Q |
201 |
attgagttacacctaagagcacacgttggagagtcgtggcaatgtg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11159445 |
attgagttacacctaagagcacacgttggagagtcgtggcaatgtg |
11159490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University