View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_29 (Length: 243)
Name: NF8557_low_29
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 36668460 - 36668600
Alignment:
| Q |
90 |
ttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagctatcacgaagcttcaaaatcttagacacgaacgtgg |
189 |
Q |
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| T |
36668460 |
ttaaggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttg |
36668559 |
T |
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| Q |
190 |
caaattgcttaacataggaaaatcttgaagaatgcaatata |
230 |
Q |
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| T |
36668560 |
taaattgcttaacataggaaaatctagaagaatgcaatata |
36668600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 36636761 - 36636924
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagc |
153 |
Q |
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| T |
36636761 |
tgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcgtgcagtgcagttgagg |
36636860 |
T |
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| Q |
154 |
tatcacgaagcttcaaaatcttagacacgaacgtggcaaattgcttaacataggaaaatcttga |
217 |
Q |
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| T |
36636861 |
tatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttga |
36636924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 35968566 - 35968437
Alignment:
| Q |
70 |
aaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagctatcacgaagcttcaa |
169 |
Q |
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| T |
35968566 |
aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa |
35968467 |
T |
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| Q |
170 |
aatcttagacacgaacgtggcaaattgctt |
199 |
Q |
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| T |
35968466 |
aatcttagacacgaacatggcaaattgctt |
35968437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 36909815 - 36909646
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagc |
153 |
Q |
| |
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| T |
36909815 |
tgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggctcaatatcaccacggcggtcaagatcaagtttgtgcagtgcggttgaag |
36909716 |
T |
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| Q |
154 |
tatcacgaagcttcaaaatcttagacacgaacgtggcaaattgcttaacataggaaaatcttgaagaatg |
223 |
Q |
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| T |
36909715 |
tatggtggagagtcaaaatcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatg |
36909646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 36643456 - 36643597
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagc |
153 |
Q |
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||||||||||| || ||| ||||||||||||||| |||||||| ||||| ||||||| ||| |||||||| || ||| | ||| | |||||||| |
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| T |
36643456 |
tgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagcttgcagagaagttgagc |
36643555 |
T |
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| Q |
154 |
tatcacgaagcttcaaaatcttagacacgaacgtggcaaatt |
195 |
Q |
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| T |
36643556 |
tattgcgaagagtcaaaatgttagacacgaatatggcaaatt |
36643597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 35974198 - 35974141
Alignment:
| Q |
143 |
tgcagttgagctatcacgaagcttcaaaatcttagacacgaacgtggcaaattgctta |
200 |
Q |
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|||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
35974198 |
tgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgctta |
35974141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 36607375 - 36607432
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatat |
111 |
Q |
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| T |
36607375 |
tgggtattatgtgatcaaacattatttaaaatatttttaaggagttgaggctcaatat |
36607432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 19658157 - 19658329
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagc |
153 |
Q |
| |
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||||||||||| || ||||||||| ||||||||| ||||||| |||||||||||| ||| ||| |||| |||||| || |||||| | ||||| |
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| T |
19658157 |
tgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgagg |
19658256 |
T |
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| Q |
154 |
tatcacgaagcttcaaaatcttagacacgaacgtggcaaattgcttaacataggaaaatcttgaagaatgcaa |
226 |
Q |
| |
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|||||||||| |||||||||||| |||||| ||| ||||||||| | | ||||||| | ||||||||||| |
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| T |
19658257 |
tatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaa |
19658329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 19674996 - 19675168
Alignment:
| Q |
54 |
tgggtattatgagaataaacataatttaaaatcttgttaaggagctgaggctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagc |
153 |
Q |
| |
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||||||||||| || ||||||||| ||||||||| ||||||| |||||||||||| ||| ||| |||| |||||| || |||||| | ||||| |
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| T |
19674996 |
tgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgagg |
19675095 |
T |
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| Q |
154 |
tatcacgaagcttcaaaatcttagacacgaacgtggcaaattgcttaacataggaaaatcttgaagaatgcaa |
226 |
Q |
| |
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|||||||||| |||||||||||| |||||| | | ||||||||| | | ||||||| | ||||||||||| |
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| T |
19675096 |
tatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaa |
19675168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 42602647 - 42602825
Alignment:
| Q |
3 |
cgcataatgagacaagtatcaccctgtagagatatccctaattcctcaagctgggtattatgagaataaacataatttaaaatcttgttaaggagctgag |
102 |
Q |
| |
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|||| ||||||||| || ||||| |||||||| || ||||||| | || ||||||||||| ||||||||| | | || || ||| |||||||| || | |
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| T |
42602647 |
cgcaaaatgagacatgtttcaccatgtagagagattcctaattgttggaggtgggtattatgggaataaacacagtctagaacctttttaaggagttgcg |
42602746 |
T |
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| Q |
103 |
gctcaatattgccagtacgatcaacatcaagaacgcgcaatgcagttgagctatcacgaagcttcaaaatcttagacac |
181 |
Q |
| |
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| T |
42602747 |
gctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacac |
42602825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 33840168 - 33840244
Alignment:
| Q |
123 |
tcaacatcaagaacgcgcaatgcagttgagctatcacgaagcttcaaaatcttagacacgaacgtggcaaattgctt |
199 |
Q |
| |
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|||| |||||||| | ||||||||| |||| |||||||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
33840168 |
tcaaaatcaagaatgtgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt |
33840244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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