View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8557_low_3 (Length: 581)
Name: NF8557_low_3
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_3 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 48967823 - 48967922
Alignment:
| Q |
335 |
taccacttttcattctcaacaacaccattgtttacccaataaaaccacaaaaatacaaatttaaataatttaccgtcaatttgaatgagatagaaacaaa |
434 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
48967823 |
taccaattttcattctcaacagcaccattatttacccaataaaaccacaaaaatacaaatttaagtaatttaacgtaaatttaaatgagatagaaacaaa |
48967922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 42994539 - 42994496
Alignment:
| Q |
335 |
taccacttttcattctcaacaacaccattgtttacccaataaaa |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
42994539 |
taccaattttcattctcaacaacaccattatttacccaagaaaa |
42994496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 81684 - 81747
Alignment:
| Q |
335 |
taccacttttcattctcaacaacaccattgtttacccaataaaaccacaaaaatacaaatttaa |
398 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
81684 |
taccaattttcattctcaacaataccattatttacccaataaaaccacaaaaatacaaatttaa |
81747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 26496152 - 26496061
Alignment:
| Q |
168 |
aaattctacaaacagtgatattcacaacctgtcaaaacataagaaattacacatcaacaaatgcatccaccatccttgaagtgtttctgtcaaa |
261 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||| |||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
26496152 |
aaattctaaaaacagtgatat--acaacctgttaaaacaaaagagattctacagcaacaaatgcatccaccattcttgaagtgtttatgtcaaa |
26496061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 11503848 - 11503765
Alignment:
| Q |
352 |
aacaacaccattgtttacccaataaaaccacaaaaa-tacaaatttaaataatttaccgtcaatttgaatgagatagaaacaaa |
434 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||| ||||||||||| ||| ||||| ||| ||| ||||||||||||||||| |
|
|
| T |
11503848 |
aacatcaccattgtttatccaataaagacacaaaaaatacaaatttaattaacttaccatcagtttaaatgagatagaaacaaa |
11503765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 923267 - 923225
Alignment:
| Q |
337 |
ccacttttcattctcaacaacaccattgtttacccaataaaac |
379 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
923267 |
ccacttttcattcacaacaacaccattgtttacctaataaaac |
923225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 38016395 - 38016447
Alignment:
| Q |
335 |
taccacttttcattctcaacaacaccattgtttacccaata-aaaccacaaaa |
386 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| ||||||| ||||||||||| |
|
|
| T |
38016395 |
taccactttttattctcaaaatcaccattgtttgcccaatacaaaccacaaaa |
38016447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University