View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8557_low_30 (Length: 242)
Name: NF8557_low_30
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 8138621 - 8138719
Alignment:
| Q |
125 |
ttatgagacaaatttatcgatctattttttaaaattttaagcacatacataattcttattaacaagaattaaatttctctctattttggttgagcagat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8138621 |
ttatgagacaaatttatcgatctattttttaaaattttaagcacatacatagttcttattaacaagaattaaatttctctctattttggttgagcagat |
8138719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 8138502 - 8138602
Alignment:
| Q |
35 |
aagtgcaaataatgtgagattgcatgtttgaactcccgatcttgcatacgtatcaaatgtttatgtaaccatttttctatttgggttgtattatgagaca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
8138502 |
aagtgcaaataatgtgagattgcatgtttgaactcccgatcttgcatacgtatcaaatgtttatttagccattttcctatttgggttgtattatgagaca |
8138601 |
T |
|
| Q |
135 |
a |
135 |
Q |
| |
|
| |
|
|
| T |
8138602 |
a |
8138602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8138440 - 8138477
Alignment:
| Q |
1 |
tttttacagtaaaatttatttatttatatctaaaaagt |
38 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
8138440 |
tttttacactaaaatttatttctttatatctaaaaagt |
8138477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University