View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8557_low_34 (Length: 241)

Name: NF8557_low_34
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8557_low_34
NF8557_low_34
[»] scaffold0045 (2 HSPs)
scaffold0045 (19-175)||(75083-75233)
scaffold0045 (177-224)||(75545-75592)


Alignment Details
Target: scaffold0045 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 75083 - 75233
Alignment:
Q  19 aaatgtcacttgtatgtacaatggaagagtattaatggattacattttagtttgatgtttaatatccacctttatcatgtttatgtgagacatgaataat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75083 aaatgtcacttgtatgtacaatggaagagtattaatggattacattttagtttgatgtttaatatccacctttatcatgtttatgtgagacatgaataat 75182  T
Q  119 tagagtgagtgatgtctacaattagagtgggtctgggtgatgaaataaattaatttt 175  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||||||    
T  75183 tagagtgagtgatgtctacaattagag------tgggtgatgaaataaattaatttt 75233  T

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Target: scaffold0045; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 75545 - 75592
Alignment:
Q  177 gaaaaaattatatgaataggcgtgtttttggtattatggtaatttttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  75545 gaaaaaattatatgaataggcgtgtttttggtattatggtaatttttt 75592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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