View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8557_low_38 (Length: 232)

Name: NF8557_low_38
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8557_low_38
NF8557_low_38
[»] chr2 (13 HSPs)
chr2 (1-216)||(16657309-16657524)
chr2 (4-213)||(16661787-16661996)
chr2 (2-216)||(43625574-43625788)
chr2 (4-214)||(7542390-7542600)
chr2 (4-216)||(12234853-12235065)
chr2 (4-216)||(14703572-14703784)
chr2 (2-216)||(11999556-11999770)
chr2 (4-114)||(12258475-12258585)
chr2 (1-216)||(12245198-12245413)
chr2 (75-216)||(17716485-17716626)
chr2 (8-38)||(17704013-17704043)
chr2 (8-45)||(273279-273316)
chr2 (2-38)||(17648005-17648041)
[»] chr7 (33 HSPs)
chr7 (1-216)||(13333248-13333463)
chr7 (1-217)||(8659524-8659740)
chr7 (1-213)||(1301621-1301837)
chr7 (1-216)||(10494166-10494381)
chr7 (1-216)||(8667580-8667795)
chr7 (2-207)||(8654612-8654817)
chr7 (4-213)||(8585501-8585710)
chr7 (32-216)||(8671422-8671606)
chr7 (4-214)||(17268103-17268313)
chr7 (4-213)||(8628696-8628905)
chr7 (4-213)||(17260405-17260614)
chr7 (4-216)||(8647041-8647253)
chr7 (1-213)||(6789673-6789885)
chr7 (83-216)||(8636135-8636268)
chr7 (2-200)||(8576488-8576686)
chr7 (4-198)||(27830685-27830879)
chr7 (60-216)||(3147492-3147648)
chr7 (4-201)||(8610081-8610278)
chr7 (83-216)||(8602217-8602350)
chr7 (2-216)||(8570473-8570687)
chr7 (130-216)||(8640339-8640425)
chr7 (4-216)||(29581633-29581845)
chr7 (72-216)||(39985878-39986022)
chr7 (86-192)||(8538282-8538388)
chr7 (2-216)||(8581862-8582076)
chr7 (83-216)||(7877525-7877658)
chr7 (89-217)||(8017204-8017332)
chr7 (136-216)||(8590934-8591014)
chr7 (70-198)||(29577479-29577607)
chr7 (83-207)||(8382677-8382801)
chr7 (2-48)||(8545795-8545841)
chr7 (74-216)||(8102901-8103043)
chr7 (83-215)||(8559576-8559708)
[»] chr1 (3 HSPs)
chr1 (1-217)||(4678349-4678565)
chr1 (4-216)||(34466585-34466797)
chr1 (1-213)||(15595195-15595414)
[»] chr4 (5 HSPs)
chr4 (1-216)||(9335683-9335898)
chr4 (4-201)||(30775416-30775613)
chr4 (8-216)||(35132616-35132824)
chr4 (72-216)||(23587525-23587669)
chr4 (82-217)||(54396665-54396800)
[»] chr8 (2 HSPs)
chr8 (69-216)||(43745078-43745223)
chr8 (4-216)||(12528668-12528880)
[»] chr5 (1 HSPs)
chr5 (4-216)||(28220115-28220327)
[»] chr6 (4 HSPs)
chr6 (8-216)||(28910750-28910958)
chr6 (75-157)||(11200123-11200205)
chr6 (83-157)||(11170813-11170887)
chr6 (83-157)||(11209635-11209709)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 16657524 - 16657309
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16657524 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaagaccatatgcaatagctgca 16657425  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657424 gcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 16657325  T
Q  201 taacaacagcattctt 216  Q
    ||||||||||||||||    
T  16657324 taacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 16661996 - 16661787
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||| | || ||||||||||| |||||| |||||||  ||||||||||||||||| |||    
T  16661996 agacacatcaaaagtcccaccaccaagatcaaagacaaaaatatttctttcaccatcacaattacttcttttgtcaaggccatatgcaatagctgctgca 16661897  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||||||||| || |  |  || |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||| || ||||| |    
T  16661896 gtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtga 16661797  T
Q  204 caacagcatt 213  Q
    |||| |||||    
T  16661796 caactgcatt 16661787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 43625574 - 43625788
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||| ||||  ||| |||||| | ||||||||| ||  || ||||| | ||| ||||    
T  43625574 atagacacatcaaaagtaccaccaccaaggtcaaagatgaaaatatttcgttctccaacacaattaattctcttgttaaggccgtatgctagagcagcag 43625673  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    | || ||||||||||| | ||| || |||||||||||  ||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||    
T  43625674 ctgttggttcattgattactcgtaaaacattaaggccgacaatgacaccaacatctatggtggcttttcgctgagaatcattgaagtaagcaggcacggt 43625773  T
Q  202 aacaacagcattctt 216  Q
    |||||| ||||||||    
T  43625774 aacaactgcattctt 43625788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 7542390 - 7542600
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| || |  |||||| ||||| ||||||||||||  |||||||||| |||||| |||    
T  7542390 agacacatcaaaagtgccaccgccaagatcaaaaacaaaaatatttcgctctccatcataatcagttctcttgtcaaggccatatgcaacagctgcggca 7542489  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    ||||||||||| ||    |  |  ||||| ||||||||||||||||| |||||||| ||||||||||| || |||||||| || ||||| || |||||||    
T  7542490 gtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaa 7542589  T
Q  204 caacagcattc 214  Q
    |||| ||||||    
T  7542590 caactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 12234853 - 12235065
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| |||||||| || ||||| ||||||||||| ||||  ||| |||||||| |||||||||||| ||||||||||| ||| || ||     
T  12234853 agacacatcaaaagtgccaccgccgagatcaaaaacaaaaatatttcgttctccaacacaatcagttctcttgtcaagaccatatgcaacagcggctgcc 12234952  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
     | ||||| || || |  |  |  ||||| |||||||||||| ||||||||||||| || |||||||| || ||||||||||| ||||| ||||| ||||    
T  12234953 atgggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaa 12235052  T
Q  204 caacagcattctt 216  Q
    |||| ||||||||    
T  12235053 caactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 14703572 - 14703784
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    |||||| |||||||||||||| ||||| ||||||||||| ||||| ||||  ||| || ||||| ||||||||||||  ||||||||||||||||||||     
T  14703572 agacacgtcaaaagtaccaccaccaagatcaaagacaaatatattacgttctccaccataatcagttctcttgtcaaggccatatgcaatagctgcagct 14703671  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    ||||||||||| || |  |  |  ||||| ||||| |||||  |||||||||| || ||||||||||  || |||||| | || ||||| ||||| ||||    
T  14703672 gtaggttcattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttttctttgagaatcactaaaataagcaggcaccgtaa 14703771  T
Q  204 caacagcattctt 216  Q
    |||| ||||||||    
T  14703772 caactgcattctt 14703784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 11999556 - 11999770
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||| ||||||||| ||||||||||| |||||||| ||||| || | ||  ||| ||||||||  |||||||||||  |||||||||| || |||||    
T  11999556 atagacaaatcaaaagtgccaccgccaagatcaaagactaaaatgtttctttctccaacacaatcagctctcttgtcaaggccatatgcaacagttgcag 11999655  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    |||| |||||||| || |  |  |  ||||| | ||||||||| ||||| |||||||| ||||||||||| || |||||| | || |||||||| |||||    
T  11999656 cagtgggttcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggcttttcgttgagaatcactaaaataagctggtacagt 11999755  T
Q  202 aacaacagcattctt 216  Q
    ||||||| |||||||    
T  11999756 aacaacaacattctt 11999770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 12258585 - 12258475
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||||||  |  |||||| | |||| |||||||  |||||||||| ||||||||||    
T  12258585 agacacatcaaaagtgccaccaccaagatcaaagacaaaaatattccgtttttcgacacaattaattcttttgtcaaggccatatgcaaaagctgcagca 12258486  T
Q  104 gtaggttcatt 114  Q
    |||||||||||    
T  12258485 gtaggttcatt 12258475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12245413 - 12245198
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||| || |||||||| ||||| ||||| ||||| |||||||| || | ||  ||| ||||||||  |||||| ||||  |||||||||| |||||||    
T  12245413 gatagaaacgtcaaaagtgccaccaccaagatcaaacacaaaaatgtttctttctccaacacaatcagctctcttttcaaggccatatgcaacagctgca 12245314  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||| |||||||| || |  |  |  ||||| || |||||||| |  ||||||||||| || ||||||||||| |||||| | || ||||| || ||||    
T  12245313 gcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacag 12245214  T
Q  201 taacaacagcattctt 216  Q
    ||||||||||||||||    
T  12245213 taacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 17716626 - 17716485
Alignment:
Q  75 tgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctg 174  Q
    |||||| |||||| ||||| ||||||||||| || ||||| |||||||  | || |||||| |||||||| ||||||||||   | || |||| || |||    
T  17716626 tgtcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctg 17716527  T
Q  175 cgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
     |||  ||| |||||||| || ||||||||||| ||||||||    
T  17716526 agaaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 17704043 - 17704013
Alignment:
Q  8 acatcaaaagtaccaccgccaaggtcaaaga 38  Q
    |||||||||||||||||||||||||||||||    
T  17704043 acatcaaaagtaccaccgccaaggtcaaaga 17704013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 273316 - 273279
Alignment:
Q  8 acatcaaaagtaccaccgccaaggtcaaagacaaaaat 45  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  273316 acatcaaaagtaccacctccaaggtcaaagaccaaaat 273279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 17648041 - 17648005
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaaga 38  Q
    ||||| || ||||||||||||||||||||||||||||    
T  17648041 atagagacgtcaaaagtaccaccgccaaggtcaaaga 17648005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13333463 - 13333248
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  13333463 gatagacacatcaaaagtaccaccacccagatcaaagacaaaaatatttcgcttaccatcacaatcacgtctcttgtcaaggccatatgcaatagctgca 13333364  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||    
T  13333363 gcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacag 13333264  T
Q  201 taacaacagcattctt 216  Q
    ||||||| ||||||||    
T  13333263 taacaacggcattctt 13333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8659524 - 8659740
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||  ||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  8659524 gatagacacatcaaaagtaccaccaccaagatcaaagaccaaaatattttgtttaccatcacagtcacctctcttgtcaaaaccatatgcaatagctgca 8659623  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    |||||||||||||| || ||  ||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| || || ||||| |    
T  8659624 gcagtaggttcattaattatctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcactg 8659723  T
Q  201 taacaacagcattcttc 217  Q
    |||||||||||||||||    
T  8659724 taacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1301621 - 1301837
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  1301621 gatagacacatcaaaagtaccaccgccaaggtcaaagaccaaaatattccgtttaccatcacagtcacttctcttgtcaaaaccatacgcaatagctgca 1301720  T
Q  101 gcag----taggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggc 196  Q
    ||||    |||||||||| || ||  ||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |  || |||    
T  1301721 gcagtagctaggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggc 1301820  T
Q  197 acagtaacaacagcatt 213  Q
    |||||||||||||||||    
T  1301821 acagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10494381 - 10494166
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||||||||| || || ||||||||||||||||| || ||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  10494381 gatagacacatcaaaagtaccaccacccagatcaaagacaaaaatatttcggttaccctcacaatcacttctcttgtcaaggccatatgcaatagctgca 10494282  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||| ||||||||||| || || || ||||| || ||||| ||||||||||| |||||||    
T  10494281 gcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacag 10494182  T
Q  201 taacaacagcattctt 216  Q
    ||||||||||||||||    
T  10494181 taacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8667580 - 8667795
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||| || || || || ||||||||||||||||| ||  |||||||||| ||| ||||||||||||  |||||||||||||||||     
T  8667580 gatagacacatcaaaagtcccgccacccagatcaaagacaaaaatatttcggctaccatcacagtcatttctcttgtcaaggccatatgcaatagctgcc 8667679  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||||||||||||||| || |||| ||||||||| |||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8667680 gcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcacag 8667779  T
Q  201 taacaacagcattctt 216  Q
    ||||||| ||||||||    
T  8667780 taacaacggcattctt 8667795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 8654612 - 8654817
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||| | | ||||| ||||||||  ||||||||||||||||| |    
T  8654612 atagacacatcaaaagtaccaccaccaagatcaaataccaaaatattccgtttaccatcatagttacttcgcttgtcaaggccatatgcaatagctgcgg 8654711  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    |||||||||||||||  || |||| ||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||||||||    
T  8654712 cagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagt 8654811  T
Q  202 aacaac 207  Q
    ||||||    
T  8654812 aacaac 8654817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 8585710 - 8585501
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| ||||||||| | || | | |||||||  |||||||||||||||||||||    
T  8585710 agacacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacagttacctttgttgtcaaggccatatgcaatagctgcagca 8585611  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||||||||| || |  |  ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |    
T  8585610 gtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggcacagtca 8585511  T
Q  204 caacagcatt 213  Q
    |||| |||||    
T  8585510 caactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 8671606 - 8671422
Alignment:
Q  32 tcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacat 131  Q
    ||||||||||||||||| || ||||| ||||  ||| ||||||||||||  ||||||||||||||||||||||||||||||||||| || |||| |||||    
T  8671606 tcaaagacaaaaatatttcggttaccttcacggtcatttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacat 8671507  T
Q  132 taaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
    |||| |||||||| | ||||||||| ||||||||  ||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  8671506 taagtccagcaatagtaccagcatcaatggtggccgttcgctgagaatcattgaagtaagctggcacggtaacaacggcattctt 8671422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 17268103 - 17268313
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||   || |||| | | |||||||| |||  |||||||||||||||||||||    
T  17268103 agacacatcaaaagtcccaccaccaaggtcaaagacaaaaatattccgttcttcaacacagttagttctcttgccaaggccatatgcaatagctgcagca 17268202  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||||||||| |     || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||    
T  17268203 gttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttgaagtaagccgggacagtaa 17268302  T
Q  204 caacagcattc 214  Q
      |||||||||    
T  17268303 tgacagcattc 17268313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 8628696 - 8628905
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||||||   || | | |||||||  |||||||||||||||||||||    
T  8628696 agacacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacacctacctttgttgtcaaggccatatgcaatagctgcagca 8628795  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || || |||||||| || |  |  ||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||| ||||| || |    
T  8628796 gtggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcaggcacggtga 8628895  T
Q  204 caacagcatt 213  Q
    |||| |||||    
T  8628896 caactgcatt 8628905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 17260405 - 17260614
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||     | |||||| | |||||||| |||  |||||||||||||||||||||    
T  17260405 agacacatcaaaagtccccccaccaaggtcaaagacaaaaatattccgtacttaaacacaattagttctcttgacaaggccatatgcaatagctgcagca 17260504  T
Q  104 gtaggttcattgat-aattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagta 202  Q
     |||||||||| || || |  ||| |||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||    
T  17260505 ataggttcattaattaacttcaaa-acataaaggccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagta 17260603  T
Q  203 acaacagcatt 213  Q
    | |||| ||||    
T  17260604 ataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 8647041 - 8647253
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| |||||||| ||||  || ||||| ||||   || ||||||   ||||||||||||  |||||||| | ||| |||||     
T  8647041 agacacatcaaaagttccaccaccaaggtcgaagatgaatatatttcgttcttcagcacaatttgttctcttgtcaaggccatatgcgagagcagcagct 8647140  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||||||||| || || | || |||||||||||||||||| || |||||||| ||||||||||||||  ||||||||||||| || ||||||||||    
T  8647141 gttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattgaagtatgcaggcacagtaa 8647240  T
Q  204 caacagcattctt 216  Q
    |||| ||||||||    
T  8647241 caactgcattctt 8647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6789673 - 6789885
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||| ||||| ||||| |||||||| ||||| ||||||||   ||  ||| |  ||| | ||||||| ||||  |||||||||| ||| |||    
T  6789673 gatagacacatcgaaagtgccaccaccaaggtcgaagacgaaaatatttttttctccaccgtaattagttctcttatcaaggccatatgcaagagcagca 6789772  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    || || ||||||||||| ||||| |  |||||||| ||||||||||||||||||||||  |||||||| || || ||||||||||| ||||| |||||||    
T  6789773 gctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacag 6789872  T
Q  201 taacaacagcatt 213  Q
    ||| ||| |||||    
T  6789873 taataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 8636268 - 8636135
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcat 182  Q
    ||||| |||| |||||||||||| ||||||||||| || ||||  ||||||||||| |||||||||||||||||| |||||| ||| ||||| |||||||    
T  8636268 ccatacgcaaaagctgcagcagttggttcattgattatccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcat 8636169  T
Q  183 tgaagtaagctggcacagtaacaacagcattctt 216  Q
    |||| ||||| ||||||||||  || ||||||||    
T  8636168 tgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 8576488 - 8576686
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| | |||| || |||||| |  |||||| | ||  ||||| |||| |||||| |    
T  8576488 atagacacatcaaaagttccaccgccaaggtcaaagataaaaatatttcttttatcaacacaattagctctcttttgaaggccatacgcaagagctgccg 8576587  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    |||| ||||||||||| ||  | | |||||| || |||||||| ||||| |||||| | |||||| |||| || |||||||| || ||||| |||||||    
T  8576588 cagtcggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcacag 8576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 27830879 - 27830685
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||  |||  | | |   ||| | ||||||  |||||||||||||||||||||    
T  27830879 agacacatcaaaagtcccaccaccaaggtcaaacacaaaaatattccgttctccagtatattttgttcccgtgtcaaggccatatgcaatagctgcagca 27830780  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcac 198  Q
    ||||| ||  | || || || |  ||||||||||||||||||||||| | |||||  ||||||||||| || || |||||||| |||||||||||    
T  27830779 gtaggctcgcttattatccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagagtcattgaaataagctggcac 27830685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 3147492 - 3147648
Alignment:
Q  60 cacaatcacttctcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctat 159  Q
    |||||| | |||||||||| |  ||||| ||||||||||||||||||||||||||||| || || |  | |||||||||||||||  |||||||||||||    
T  3147492 cacaattagttctcttgtccagtccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctat 3147591  T
Q  160 ggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
     || ||||| ||||| | ||||||||| ||||| || || |||||||| ||||||||    
T  3147592 tgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 8610081 - 8610278
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccg-tttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagc 102  Q
    ||||||||| ||||| ||||| ||||| ||||||| ||||||||| |  ||| ||| |||||| |  |||||| | || ||||||||||| ||| |||||    
T  8610081 agacacatcgaaagtcccaccaccaagatcaaagataaaaatatttctattttcca-cacaattagctctcttctgaagaccatatgcaagagccgcagc 8610179  T
Q  103 agtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
     || |||||||||||||| || |  ||||||||||||| |||| ||||||||||| | |||||||| ||||| |||||||| || ||||| ||||||||    
T  8610180 cgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggctttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 8602217 - 8602350
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcat 182  Q
    |||||||||| ||| || ||||| || |||||||| || || |  ||||| || ||||||||||||||||||||| | |||||||||||||| |||||||    
T  8602217 ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcat 8602316  T
Q  183 tgaagtaagctggcacagtaacaacagcattctt 216  Q
    | || ||||| |||||||||||||| ||||||||    
T  8602317 taaaataagccggcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 8570473 - 8570687
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| |  ||| || || ||| |  |||||| | ||  |||||||||| |||||| |    
T  8570473 atagacacatcaaaagttccaccgccaaggtcaaagataaaaatatttctcttatcaacaaaattagctctcttttgaaggccatatgcaagagctgccg 8570572  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    |||| ||||||||||| || || |  ||||| || ||||||||  |||| |||||| | |||||| |||| || |||||||| || ||||| || |||||    
T  8570573 cagtcggttcattgattatccgcattacattgagaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagt 8570672  T
Q  202 aacaacagcattctt 216  Q
    ||  || ||||||||    
T  8570673 aatcactgcattctt 8570687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 8640425 - 8640339
Alignment:
Q  130 attaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
    |||||||||||||||||| || |||||||||||||||||| ||||  |||||||||||||||| |||| ||||||||| ||||||||    
T  8640425 attaaggccagcaatggccccggcatctatggtggctttttgctgataatcattgaagtaagcaggcatagtaacaactgcattctt 8640339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 29581845 - 29581633
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| |||||||  || ||||| ||||| ||| || ||| || || ||| | ||||||||||||||  || ||||||    
T  29581845 agacacatcaaaagtgccaccaccaagatcaaagatgaatatatttcgttttccaacaaaattacctcccttttgaataccatatgcaagtgcagcagca 29581746  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||| ||||| || |  |  ||||| |||||||| ||    ||||||||| |||||||||||||||| ||||||||||| ||||| ||||| ||||    
T  29581745 gttggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaa 29581646  T
Q  204 caacagcattctt 216  Q
      || ||||||||    
T  29581645 tcactgcattctt 29581633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 39985878 - 39986022
Alignment:
Q  72 tcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcg 171  Q
    ||||||||| |||||| ||||| || |||||||| || |||||||||||||| | ||||||||| || |||||  | ||||||||  |||| ||||  ||    
T  39985878 tcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacg 39985977  T
Q  172 ctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
    ||| || ||||| |||||||| || ||||||||||||||||||||    
T  39985978 ctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 8538282 - 8538388
Alignment:
Q  86 tatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattga 185  Q
    ||||||| ||| ||||| |||||||||||||| || || |  ||||| |||||||||||| ||||||||||| |||||||| ||||||| ||||||||||    
T  8538282 tatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattga 8538381  T
Q  186 agtaagc 192  Q
    | |||||    
T  8538382 aataagc 8538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 8581862 - 8582076
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcag 101  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||| |  ||| || |||||| |  |||||| | ||  |||||||||| |||||| |    
T  8581862 atagacacatcaaaagttccacctccaaggtcaaagataaaaatatttctcttatcaacacaattagctctcttttgaaggccatatgcaagagctgccg 8581961  T
Q  102 cagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    |||| ||||||||||| || || |  ||||| || || |||||  |||| |||||| | |||||| |||| || |||||||| || ||||| || |||||    
T  8581962 cagtcggttcattgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagt 8582061  T
Q  202 aacaacagcattctt 216  Q
    ||  || ||||||||    
T  8582062 aatcactgcattctt 8582076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 7877658 - 7877525
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcat 182  Q
    ||||||||||  || |||||||| |||||||| || || || |  ||||| ||||| ||||  |||||||||||| | ||||||||||| || |||||||    
T  7877658 ccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcat 7877559  T
Q  183 tgaagtaagctggcacagtaacaacagcattctt 216  Q
    |||| ||||| |||||||||||||| ||||||||    
T  7877558 tgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 8017332 - 8017204
Alignment:
Q  89 gcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagt 188  Q
    |||||||||||||| || || || ||||||||||  || ||||| || || |||||| |||| |||||  | |||||||  |||||||||||||||||||    
T  8017332 gcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagt 8017233  T
Q  189 aagctggcacagtaacaacagcattcttc 217  Q
    ||||||| || |||||||| |||||||||    
T  8017232 aagctggaactgtaacaacggcattcttc 8017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 8590934 - 8591014
Alignment:
Q  136 gccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
    |||||||||| ||||||||||| |||| ||||| | ||| |||||||| || |||||||||||||||||||| ||||||||    
T  8590934 gccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 29577607 - 29577479
Alignment:
Q  70 tctcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggctttt 169  Q
    |||||| | ||| ||||||||||  || |||||||| ||||||||||| || || |  ||||| |||||||||||    || |||||| |||||||||||    
T  29577607 tctcttttgaattccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggctttt 29577508  T
Q  170 cgctgcgaatcattgaagtaagctggcac 198  Q
    ||||| ||||||||||| |||||||||||    
T  29577507 cgctgagaatcattgaaataagctggcac 29577479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 8382801 - 8382677
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcat 182  Q
    |||||||||| ||| || ||||| || |||||||| || || |  ||||| ||||||||||| |||||||||||| | |||||||| || || |||||||    
T  8382801 ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcat 8382702  T
Q  183 tgaagtaagctggcacagtaacaac 207  Q
    |||| || || ||||| ||||||||    
T  8382701 tgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 8545795 - 8545841
Alignment:
Q  2 atagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatatt 48  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8545795 atagacacatcaaaagttccaccgccaaggtcaaagataaaaatatt 8545841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 8102901 - 8103043
Alignment:
Q  74 ttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgct 173  Q
    ||||||| ||| || |||||||| |||||||| || ||||| |||||||  || ||||| |  ||||| ||  ||||||||||| | || ||||  ||||    
T  8102901 ttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgct 8103000  T
Q  174 gcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
    | ||||||||||||||||| || ||||| || || ||||||||    
T  8103001 gagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 8559576 - 8559708
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcat 182  Q
    |||||||||| ||| || ||||| ||||||||||| ||  | |  |||||||| ||||||||  |||| |||||| |||||||| |||  || |||||||    
T  8559576 ccatatgcaagagcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcat 8559675  T
Q  183 tgaagtaagctggcacagtaacaacagcattct 215  Q
    | || ||||| || || ||||  ||||||||||    
T  8559676 taaaataagcaggtacggtaatcacagcattct 8559708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4678565 - 4678349
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||  |||||||||||||||| |||||||||||||||||||    
T  4678565 gatagacacatcaaaagtaccaccaccaaggtcaaagacaaatatatttcgtttacaatcactttcacttctcttgtcaaaaccatatgcaatagctgca 4678466  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
     |||||||||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||    
T  4678465 acagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacag 4678366  T
Q  201 taacaacagcattcttc 217  Q
    |||||||  ||||||||    
T  4678365 taacaacgacattcttc 4678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 34466797 - 34466585
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtt-taccatcacaatcacttctcttgtcaataccatatgcaatagctgcagc 102  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||| | || | ||| || | |||  |||||||||||  ||||||||||||||||||||    
T  34466797 agacacatcaaaagtcccaccaccaaggtcaaagacgaaaatatttccttcttcca-caaagtcagctctcttgtcaagtccatatgcaatagctgcagc 34466699  T
Q  103 agtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagta 202  Q
    ||| ||||||||||| ||| | || ||||||||||||||||| | ||||||||| |  || ||||||||||| |||||||| || ||||| ||||| ||     
T  34466698 agtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcattaaaataagcaggcacggtg 34466599  T
Q  203 acaacagcattctt 216  Q
    | ||| ||||||||    
T  34466598 ataactgcattctt 34466585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 15595195 - 15595414
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||  ||| |||| | | | ||||||||||  ||||||||||||||||||    
T  15595195 gatagacacatcaaaagtgccaccaccaagatcaaagacaaaaatatttctttctccaacacagttaatcctcttgtcaaggccatatgcaatagctgca 15595294  T
Q  101 gcagta-------ggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagct 193  Q
    || ||        ||||||||||| |  || |  ||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||  |||||     
T  15595295 gctgtcagctgtcggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagca 15595394  T
Q  194 ggcacagtaacaacagcatt 213  Q
    ||||| |||||||| |||||    
T  15595395 ggcacggtaacaactgcatt 15595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9335898 - 9335683
Alignment:
Q  1 gatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgca 100  Q
    ||||||||||||||||||||| || || || ||||||||||||||||| || ||||||||||| ||| ||||||| ||||  ||||||||||||||||||    
T  9335898 gatagacacatcaaaagtaccgccacccagatcaaagacaaaaatatttcggttaccatcacagtcatttctcttatcaaggccatatgcaatagctgca 9335799  T
Q  101 gcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacag 200  Q
    ||||||||||||||||| || |||| |||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||| |    
T  9335798 gcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcacgg 9335699  T
Q  201 taacaacagcattctt 216  Q
    ||||||| ||||||||    
T  9335698 taacaacggcattctt 9335683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 30775416 - 30775613
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||  | | |||||||   || |||||| ||||  ||||||||||||||||| |||    
T  30775416 agacacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgca 30775515  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagt 201  Q
    || || ||||| || ||||  |  |||||||| |||||||||||||||||||| || |||||||||||||| | ||||||||| ||||| ||||||||    
T  30775516 gtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 35132616 - 35132824
Alignment:
Q  8 acatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagcagtag 107  Q
    ||||||||||| ||||| ||||| || ||||||||||||||  |||  ||| ||||||||  |||||||||||  ||||||||||  ||||| |||||||    
T  35132616 acatcaaaagtgccaccaccaagatcgaagacaaaaatattttgttctccagcacaatcagatctcttgtcaaggccatatgcaaccgctgcggcagtag 35132715  T
Q  108 gttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaac 207  Q
    ||||||| || | ||  |  |||||  | |||||||| |||||||||||||| ||||||||||| || |||||| | || ||||| ||||||||||||||    
T  35132716 gttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaac 35132815  T
Q  208 agcattctt 216  Q
     ||||||||    
T  35132816 tgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 23587669 - 23587525
Alignment:
Q  72 tcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcg 171  Q
    |||| |||| |||||| |||||||| ||||| ||||||||||| |||||||  || ||||| || |||| |||| |||| |||||| | || ||||  ||    
T  23587669 tcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 23587570  T
Q  172 ctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
     || ||||| ||||||||||| |||||||| ||||| ||||||||    
T  23587569 ttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 54396665 - 54396800
Alignment:
Q  82 accatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatca 181  Q
    |||||| ||||| || ||||||||||| ||||| ||||| |  || ||||| |  || | ||| |||||||||||| | || ||||  || || ||||||    
T  54396665 accataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatca 54396764  T
Q  182 ttgaagtaagctggcacagtaacaacagcattcttc 217  Q
    ||||| ||||| || |||||||||||||||||||||    
T  54396765 ttgaaataagcaggaacagtaacaacagcattcttc 54396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 43745078 - 43745223
Alignment:
Q  69 ttctcttgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttt 168  Q
    ||||||| || | |||||||||||||||||||||||| ||||||||||| ||    |  |||| ||| ||||||||||||||||||||||  ||||||||    
T  43745078 ttctcttttccagaccatatgcaatagctgcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggcttt 43745175  T
Q  169 tcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 216  Q
     |||||  |||||||||| ||||| |||||||||||||| ||||||||    
T  43745176 ccgctgataatcattgaaataagccggcacagtaacaactgcattctt 43745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 12528668 - 12528880
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagca 103  Q
    ||||||||||||||| ||||||||||||||||| | ||||||  | |  |   ||  ||||| |  |||||| | ||| |||||||||| ||| || |||    
T  12528668 agacacatcaaaagttccaccgccaaggtcaaaaataaaaatccttctctcttcaagacaattagctctcttttgaatgccatatgcaagagcagctgca 12528767  T
Q  104 gtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaa 203  Q
    || ||||| ||||| || || |  ||||| |||||||||||| ||||||||||  ||||||||  |||||||||||||||||| || |||||||| ||||    
T  12528768 gttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatccttggtggctcgtcgctgcgaatcattgaaatacgctggcaccgtaa 12528867  T
Q  204 caacagcattctt 216  Q
      || ||||||||    
T  12528868 tcactgcattctt 12528880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 28220115 - 28220327
Alignment:
Q  4 agacacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtt-taccatcacaatcacttctcttgtcaataccatatgcaatagctgcagc 102  Q
    ||||||||||||||| ||||| || ||||||||||  |||||||| |||| | ||||  || | | |||| ||||| |  |||||||||||||| |||||    
T  28220115 agacacatcaaaagtcccaccacccaggtcaaagatgaaaatatttcgttctcccatg-cagttagttcttttgtccaatccatatgcaatagcagcagc 28220213  T
Q  103 agtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagta 202  Q
    ||| ||||||||||  || |  |  ||||| || |||||||||| ||| ||||||||||||||||| |||||  |||||||||| ||||| |||||||||    
T  28220214 agtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggctttccgctgataatcattgaaataagcaggcacagta 28220313  T
Q  203 acaacagcattctt 216  Q
    | ||| ||||||||    
T  28220314 ataactgcattctt 28220327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 28910750 - 28910958
Alignment:
Q  8 acatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaataccatatgcaatagctgcagcagtag 107  Q
    ||||||||||| ||||  || ||||| ||||  ||| |||| ||||  ||| |||| |||  ||||||||| |  ||||||| ||||||| |||||||      
T  28910750 acatcaaaagtcccactacccaggtcgaagatgaaagtatttcgttctccagcacactcagctctcttgtcgaggccatatgaaatagctacagcagtga 28910849  T
Q  108 gttcattgataattcgaaagacattaaggccagcaatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaac 207  Q
    | |||||||| || || |  |||||||| |   |||||||||||||||||||||||||||| | ||  ||||||||||| ||| | | || ||||||||     
T  28910850 gctcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggctttcctctaagaatcattgaaataaccagtcaaagtaacaat 28910949  T
Q  208 agcattctt 216  Q
     ||||||||    
T  28910950 tgcattctt 28910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 11200123 - 11200205
Alignment:
Q  75 tgtcaataccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatct 157  Q
    |||||| |||||||||||| || || |||| ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||||    
T  11200123 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatct 11200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 11170813 - 11170887
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatct 157  Q
    ||||||||||| || || |||||||| |||||||  ||||| || ||||| ||||||||||| ||||| ||||||    
T  11170813 ccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatct 11170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 11209635 - 11209709
Alignment:
Q  83 ccatatgcaatagctgcagcagtaggttcattgataattcgaaagacattaaggccagcaatggcaccagcatct 157  Q
    ||||||||||| || || |||||||| |||||||  ||||| || ||||| ||||||||||| ||||| ||||||    
T  11209635 ccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatct 11209709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University