View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_4 (Length: 552)
Name: NF8557_low_4
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 534
Target Start/End: Complemental strand, 52546549 - 52546040
Alignment:
| Q |
9 |
gtgagaagaacaacaggaagtgtgtgtgctgacatatatgaaaatcagccaacacttagtaaccaagttaatagactagctgacttgtggtgtcccattg |
108 |
Q |
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| T |
52546549 |
gtgaaaagaacaacaggaagtgtgtgtgctgacatatatgaaaatcagccaacacttag----------------ctagctgacttgcggtgtcccattg |
52546466 |
T |
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| Q |
109 |
gacaaaagatcacccaaattaaatttgctagctatggattgccacaaggtacttgtggaaattttcgagaaggaacttgtcatgctcacaaatcatatga |
208 |
Q |
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| T |
52546465 |
gacaaaagatcacccaaattaaatttgctagctatggattgccacaaggtacttgtcgaaactttcgagaaggaacttgtcatgctcacaaatcatatga |
52546366 |
T |
|
| Q |
209 |
tgctcctcaaagggtatatttaccatttcaattactgtcaattctcacttagttattttcttcattccaataacaaactaataaattatcagcttgaact |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
52546365 |
tgctcctcaaagggtatatttaccatttcaattactgtcaattctcacttagttattttctccatttcaataacaaactaataaattatcagctagaact |
52546266 |
T |
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| Q |
309 |
tgtacaatatcgatttgttgcagtcatagtcttcgcattcacacagttagggagggacgtcagtagccgttggctcgagattgagttcagtatttcagnn |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52546265 |
tgtacaatatcgatttgttgcagtcatagtcttcgcattcacacagttagggagggacgtcagtagccgttggctcgagatcgagttcagtatttcagtt |
52546166 |
T |
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| Q |
409 |
nnnnnaaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaacagccactgacatctctgactacttgaatacgtggatatttaacc |
508 |
Q |
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| T |
52546165 |
tttttaaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaacagccaccgacatctctgactacttgaatacgtggatatttaacc |
52546066 |
T |
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| Q |
509 |
acagcaaatccaaattggtgcactat |
534 |
Q |
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| T |
52546065 |
acagcaaatccaaattggtgcactat |
52546040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 37846455 - 37846405
Alignment:
| Q |
414 |
aaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaac |
464 |
Q |
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|||| |||||||||||||||||||| ||||||| || |||||||||||||| |
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| T |
37846455 |
aaaaaaatcaaaatatgtattaaaaattagatcttcgaatctcaatccaac |
37846405 |
T |
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