View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_44 (Length: 212)
Name: NF8557_low_44
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 52088335 - 52088227
Alignment:
| Q |
81 |
agtaatatgatataaatcatatacacacaaagttttccaaatacactattatgagatctagtcatcagttagttagtacatgaactaacatcggttgtgt |
180 |
Q |
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| T |
52088335 |
agtaatatgatataaatcatacacacacaaagttttccaaatacaccattatgagatctagtcatca----gttactacatgaactaacatcggttgtgt |
52088240 |
T |
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| Q |
181 |
aggaggtggtaat |
193 |
Q |
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||||||||||||| |
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| T |
52088239 |
aggaggtggtaat |
52088227 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 52088405 - 52088356
Alignment:
| Q |
14 |
cagagacaaagcacccggtttgagtgatagcaatacaaataacaatatta |
63 |
Q |
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|||| ||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
52088405 |
cagacacaaaacaccccgttttagtgatagcaatacaaataacaatatta |
52088356 |
T |
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