View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_45 (Length: 203)
Name: NF8557_low_45
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 38950583 - 38950413
Alignment:
| Q |
14 |
ttggtggttttcactgttgaacataagtgcttatatgggcattctattgctgcaatatggtctgctgaaccatgacagaaggcagctgctggccagcaac |
113 |
Q |
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| T |
38950583 |
ttggcggtttccactgctgaacagcagtgcttatatgggcattctgttgctgcaatatggtctgctgaaccatgacagaaggcagctgctggccagcaac |
38950484 |
T |
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| Q |
114 |
ttgctgtgacatgcgctggtgaactgtagcagaatgcacgttcggttgcggtgcgttagcttcctgccatt |
184 |
Q |
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| T |
38950483 |
ttgctgtgacatgcgctggtgaactgtagtagaatgcacgttcggttgcggtgcattagcttcctgccatt |
38950413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 22786516 - 22786673
Alignment:
| Q |
25 |
cactgttgaacataagtgcttatatgggcattctattgctgcaatatggtctgctgaaccatgacagaaggcagctgctggccagcaacttgctgtgaca |
124 |
Q |
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| T |
22786516 |
cactgctgaacaacagtgcttatacgggcagtctgttgctgcaacacagtctgctggaccgtgacagcagcccgctgctggccagcaatctactgagaaa |
22786615 |
T |
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| Q |
125 |
tgcgctggtgaactgtagcagaatgcacgttcggttgcggtgcgttagcttcctgcca |
182 |
Q |
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| T |
22786616 |
cttgcggctgaactgtagcagattgcgcgttcagctgcggtgcattagcctcctgcca |
22786673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 54561970 - 54562142
Alignment:
| Q |
14 |
ttggtggttttcactgttgaacataagtgcttatatgggcattctattgctgcaatatggtctgctgaaccatgacagaaggcagctgctggccagcaac |
113 |
Q |
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| T |
54561970 |
ttggcggtttccactgctgaacagcagtgcttatatgggcattctgttgctgcaatatgttatgctgaaccatgacagaaggcagctgctggccaacaac |
54562069 |
T |
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| Q |
114 |
ttgctgtgacatgcgctggtgaactgtagcagaatgcacgttcggttgcggtgcgttagcttcctgccatttg |
186 |
Q |
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| T |
54562070 |
ttgatgtgacatgcgctgctgaactgtagcagaatgcgcgttcagttgcggtgcgttagcttcccgccatttg |
54562142 |
T |
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