View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_5 (Length: 467)
Name: NF8557_low_5
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 26657644 - 26657211
Alignment:
| Q |
20 |
acaatgaaatagaacatcataaagtcactgtcagaaattgatttgacctcaaatttggatgtcgaacttgcatttcaccattgacctgcagaaggttttg |
119 |
Q |
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| T |
26657644 |
acaatgaaatagaacatcataaagtcactgtcagaaattgatttgacctcaaatttggatgtcgaacttgcatttcactattgacctgcagaaggttttg |
26657545 |
T |
|
| Q |
120 |
tctttcgtataactttcgcatattctgtctcttgattccatttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgc |
219 |
Q |
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| T |
26657544 |
tctttcgtataactttcgcatattctgtctcttgattccatttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgc |
26657445 |
T |
|
| Q |
220 |
cgctctcttgttttcctatctaggtactcttttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcacaa |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26657444 |
cgctctcttgttttcctatctaggtactctgttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcacaa |
26657345 |
T |
|
| Q |
320 |
ttcaattattgaaagaatatgaaaacaaccttaaaggtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattattacaatatg |
419 |
Q |
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| T |
26657344 |
ttcaattatcgaaagaatatgaaaacaaccttaaaggtaaaatataaatgtccataaaattaacccttgaggaggaaaatatgacaattattacaatatg |
26657245 |
T |
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| Q |
420 |
ttcccataatacccaaccaaagtttatttttcat |
453 |
Q |
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| T |
26657244 |
ttcccataatacccaaccaaagtttattattcat |
26657211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 58 - 435
Target Start/End: Complemental strand, 26643973 - 26643594
Alignment:
| Q |
58 |
tgatttgacctcaaatttggatgtcgaacttgcatttcaccattgacctgcagaaggttttgtctttcgtataactttcgcatattctgtctcttgattc |
157 |
Q |
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|||||| |||||||||| ||||| | ||||||||||| ||| | |||||||| |||||| || |||||||||||||||||||||||||| |||| |
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| T |
26643973 |
tgattttacctcaaattcggatgctgtccttgcatttcagaattagcacgcagaagggtttgtcgtttatataactttcgcatattctgtctcttaattc |
26643874 |
T |
|
| Q |
158 |
catttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgccgctctcttgttttcctatctaggtactcttttgcttg |
257 |
Q |
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| T |
26643873 |
catttctgaatgaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgctgctctcttgttttcctctctaggtactctgttgcttg |
26643774 |
T |
|
| Q |
258 |
cacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcac-aattcaattattgaaagaatatgaaa-acaaccttaaag |
355 |
Q |
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| T |
26643773 |
cacttgaactgatgtatcaaaacatcatttgtagttaagcaatgaatatttataaagcacaaacccaattcttgatagaaaatgaaagtcaaccttaaag |
26643674 |
T |
|
| Q |
356 |
gtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattattacaatatgttcccataatacccaa |
435 |
Q |
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| T |
26643673 |
ataaaatgtaaatgtccataaagttagtcactaaggaggaaaatatgacaattagtacaatatctccgcataatacccaa |
26643594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 7634110 - 7634061
Alignment:
| Q |
223 |
tctcttgttttcctatctaggtactcttttgcttgcacctgaactgatat |
272 |
Q |
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||||||||||| || |||||||||| | |||||||||| ||||||||||| |
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| T |
7634110 |
tctcttgtttttctttctaggtactatgttgcttgcacttgaactgatat |
7634061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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