View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_7 (Length: 410)
Name: NF8557_low_7
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 469507 - 469891
Alignment:
| Q |
18 |
ctgttatgtctatttcatgactggtaattagttaatccaagagattgcattcttagaatgagtagagtgaaatttacgcatttcataaattcttctaatc |
117 |
Q |
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| T |
469507 |
ctgttatgtctatttcatgactggtaattagttaatccaagagattgcattcttagaatgagtagagtgaaatttacgcatttcataaattcttctaatc |
469606 |
T |
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| Q |
118 |
tcaataaaaagtatttataagcgtgcaaagaattgannnnnnnnnnnnnnnnnnnnnnnncaataagccaaaagagatatataaaaaagatgaaaatcat |
217 |
Q |
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| T |
469607 |
tcaataaaaagtatttataagcgtgcaaagaattgatttttttttttttaaagtttttttcaataagccaaaagagatatataaaaaagatgaaaatcat |
469706 |
T |
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| Q |
218 |
tcaaatacaaggtgtgcctagaatgacattaacacaaagtctagtccaattacaaattaataaaaacgaagaagaacaaacaaacgaaatcaagatgtgg |
317 |
Q |
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| T |
469707 |
tcaaatacaaggtgtgcctggaatgac-ttaacacaaagtctagtccaattacaaattaataaaaacgaagaagaacaaacaaacgaaatcaagatgtgg |
469805 |
T |
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| Q |
318 |
aataaccaatgtggacaaaagggttataccaccaagcactcaaat-caaaaaacgatattggtctttgaaccttctaccaccacca |
402 |
Q |
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| T |
469806 |
aataaccaatgtggacaaaagggttataccaccaagcactcaaataaaaaaaaccatattggtctttgaaccttcaaccaccacca |
469891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 12312592 - 12312551
Alignment:
| Q |
201 |
aaaaagatgaaaatcattcaaatacaaggtgtgcctagaatg |
242 |
Q |
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| T |
12312592 |
aaaaagatgaaaatcattcaagcacaaagtgtgcctagaatg |
12312551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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