View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8557_low_8 (Length: 405)
Name: NF8557_low_8
Description: NF8557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8557_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 32 - 387
Target Start/End: Complemental strand, 38671757 - 38671402
Alignment:
| Q |
32 |
tggtggtagtcccagttgcacatgtatatttaacatgactttcatgcgtaagatcagaatcatagatagctaaagatccaagatgtttgtggttgcttag |
131 |
Q |
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| T |
38671757 |
tggtggtagtcccagttgcacatgtatatttaacatgactttcatgcgtaagatcagaatcatagatagctaaagatccaagatgtttgtggttgcttag |
38671658 |
T |
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| Q |
132 |
gtgattatctatatgtgcagggaattcttcagcctgacatgtggggtgtgactccctccaatttgtgggattggggtgcacttcgggagatgatatcaaa |
231 |
Q |
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| T |
38671657 |
gtgattatctatatgtgcagggaattcttcagcctgacatgtggggtgtgactccctccaatttgtgggattggggtgcacttcgggagatgatatcaaa |
38671558 |
T |
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| Q |
232 |
gacaggtgtacggaattcacttcttgttgcccctatgccaactgcatctaccagtcaaattcttggcaataacgagtgttttgaaccatatacttctaat |
331 |
Q |
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| T |
38671557 |
gacaggtgtacggaattcacttcttgttgcccctatgccaactgcatctaccagtcaaattcttggcaataacgagtgttttgaaccatatacttctaat |
38671458 |
T |
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| Q |
332 |
atctacaatcgcagagtgctaaggtatattgccataccatgtcattatatgttggt |
387 |
Q |
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| T |
38671457 |
atctacaatcgcagagtgctaaggtatattgccataccatgtcattatatgttggt |
38671402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 150 - 346
Target Start/End: Complemental strand, 2060073 - 2059877
Alignment:
| Q |
150 |
agggaattcttcagcctgacatgtggggtgtgactccctccaatttgtgggattggggtgcacttcgggagatgatatcaaagacaggtgtacggaattc |
249 |
Q |
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| T |
2060073 |
agggaattcttcagcctgacatgtggggtgtgactccctccaatttgtgggattggggtgcacttcgggagatgatatcaaagacgggtgtacggaattc |
2059974 |
T |
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| Q |
250 |
acttcttgttgcccctatgccaactgcatctaccagtcaaattcttggcaataacgagtgttttgaaccatatacttctaatatctacaatcgcaga |
346 |
Q |
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| T |
2059973 |
acttcttgttgcccctatgccaactgcatctaccagtcaaattcttggcaataacgagtgttttgaaccatatacttctaatatctacaatcgcaga |
2059877 |
T |
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