View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_high_12 (Length: 238)
Name: NF8558_high_12
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_high_12 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30620 - 30398
Alignment:
| Q |
1 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30620 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
30521 |
T |
|
| Q |
101 |
ttcatatgttggtgatttagatgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30520 |
ttcatatgttggtgatttagatgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
30421 |
T |
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| Q |
201 |
gctaaatgtgtcggatttggtgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30420 |
gctaaatgtgtcggatttggtgt |
30398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 277730 - 277508
Alignment:
| Q |
1 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277730 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
277631 |
T |
|
| Q |
101 |
ttcatatgttggtgatttagatgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277630 |
ttcatatgttggtgatttagatgctaacaattttaaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
277531 |
T |
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| Q |
201 |
gctaaatgtgtcggatttggtgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
277530 |
gctaaatgtgtcggatttggtgt |
277508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26398335 - 26398113
Alignment:
| Q |
1 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398335 |
ttgataattagttgtaactatttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtga |
26398236 |
T |
|
| Q |
101 |
ttcatatgttggtgatttagatgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398235 |
ttcatatgttggtgatttagatgctaacaattttgaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatat |
26398136 |
T |
|
| Q |
201 |
gctaaatgtgtcggatttggtgt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26398135 |
gctaaatgtgtcggatttggtgt |
26398113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 26459516 - 26459587
Alignment:
| Q |
152 |
aatggaatttgagtcacaggaagatgcttattctttctatgttcgatatgctaaatgtgtcggatttggtgt |
223 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
26459516 |
aatggaatttgagtcacaagaagatgcttattctttctatgctcaatatgctaaatgtgtcggatttggtgt |
26459587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 20647040 - 20646839
Alignment:
| Q |
22 |
ttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtgattcatatgttggtgatttaga |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||| |||||| |||| |||||| | ||| ||||||| |||||||||| ||||||||| |
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| T |
20647040 |
ttttatacatatattaggaactaatggaacctatcaatgaaaatgaagagtgtgttgccaatgagccagtccatagtgaatcatatgttgctgatttaga |
20646941 |
T |
|
| Q |
122 |
tgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatatgctaaatgtgtcggatttggt |
221 |
Q |
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| ||| | | || |||||| |||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
20646940 |
ggttaaggaccatgaagaaccttacattggaatggaatttgagtcacaagaagatgcttattctttctatgctcaatatgataaatgtgtcggatttggt |
20646841 |
T |
|
| Q |
222 |
gt |
223 |
Q |
| |
|
|| |
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|
| T |
20646840 |
gt |
20646839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 846209 - 846008
Alignment:
| Q |
22 |
ttttatacatatattaggaattaatggaacccattgatgaaaacgaagagcatgttataaatgagaccgtcaatagtgattcatatgttggtgatttaga |
121 |
Q |
| |
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|||||||||||||||| || |||| ||||| || |||||||| |||||| |||| |||||| | ||||| ||||| |||||||||| ||||||||| |
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| T |
846209 |
ttttatacatatattacaaactaatagaacctatcgatgaaaatgaagagtgtgttgccaatgagcctgtcaacagtgaatcatatgttgctgatttaga |
846110 |
T |
|
| Q |
122 |
tgctaacaattttcaacaaccttctcttggaatggaatttgagtcacaggaagatgcttattctttctatgttcgatatgctaaatgtgtcggatttggt |
221 |
Q |
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| ||| || | | || |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
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| T |
846109 |
ggttaagaactatgaagaaccttacattggaatggaatttgagtcacaagaagatgcttattctttctatgctcgatatgctaaatgtgttggattaggt |
846010 |
T |
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| Q |
222 |
gt |
223 |
Q |
| |
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|| |
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|
| T |
846009 |
gt |
846008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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