View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_high_5 (Length: 279)
Name: NF8558_high_5
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_high_5 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 41413667 - 41413909
Alignment:
| Q |
18 |
atatattctaaagaaaaatggtatatattctttaactataacaattacaatttatctcactcaatattctcatttttaacacatacaaacacacatacat |
117 |
Q |
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| T |
41413667 |
atatattctaaagaaaaatggtata--ttctttaactataacaattacaatttatctcactcaatattctcatttttaacacatacaaacacacatacat |
41413764 |
T |
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| Q |
118 |
acatgctaatttctttgcattattgtgatgtgttttcaggcaatatcaatttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaat |
217 |
Q |
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| T |
41413765 |
acatgttaatttctttgcattattgtgatgtgttttcaggcaatatcaatttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaat |
41413864 |
T |
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| Q |
218 |
acctctggtttcaggcaagaacagaataacaaatatggtcattag |
262 |
Q |
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| T |
41413865 |
acctttggtttcaggcaagaacagaataacaaatatggtcattag |
41413909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 36293310 - 36293433
Alignment:
| Q |
136 |
attattgtgatgtgttttcaggcaatatcaatttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaatacctctggtttcaggcaa |
235 |
Q |
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| T |
36293310 |
attactgtgatgtgtttacaggcaatatcgatttccagaaccaatgcttcctccacataaatgacatctcttcaatgggaatacctttggtttcaggcaa |
36293409 |
T |
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| Q |
236 |
gaacagaataacaaatatggtcat |
259 |
Q |
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| T |
36293410 |
gaacagaacaacaaatatggtcat |
36293433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 20599 - 20504
Alignment:
| Q |
167 |
tttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaatacctctggtttcaggcaagaacagaataacaaatatggtcattag |
262 |
Q |
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| T |
20599 |
tttccagaaccaatgtttcctcaacaaaattgacatctcttcaatgggaatgcccttggtttcaggtaggaacaaaaaaacaaatagggtcattag |
20504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 8449 - 8357
Alignment:
| Q |
167 |
tttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaatacctctggtttcaggcaagaacagaataacaaatatggtcat |
259 |
Q |
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| T |
8449 |
tttccaaaaccagtgtttcttccacataattgccatctcttcaatgggaattcccttagtttcaggtaggaacaaaacaacaaatatggtcat |
8357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 48333077 - 48332982
Alignment:
| Q |
167 |
tttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaatacctctggtttcaggcaagaacagaataacaaatatggtcattag |
262 |
Q |
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| T |
48333077 |
tttccagaaccaatgtttcctcaacaaaattgacatctcttcaatgggaatgcccttggtttcaggtaggaacaaaaaaacaaatagggtcattag |
48332982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 48345672 - 48345580
Alignment:
| Q |
167 |
tttccagaaccaatgcttcctccacataaatgtcatctcttcaatgggaatacctctggtttcaggcaagaacagaataacaaatatggtcat |
259 |
Q |
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| T |
48345672 |
tttccagaaccagtgtttcctccaaataaatgacatctcctcaatgggtattcccttggtctcaggtaggaacaaaacaacaaagatggtcat |
48345580 |
T |
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