View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8558_high_7 (Length: 265)

Name: NF8558_high_7
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8558_high_7
NF8558_high_7
[»] chr6 (5 HSPs)
chr6 (1-265)||(14733989-14734253)
chr6 (5-233)||(15594610-15594838)
chr6 (4-228)||(31130987-31131211)
chr6 (1-64)||(8887565-8887629)
chr6 (1-46)||(26227537-26227582)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-262)||(21392-21653)
[»] chr4 (8 HSPs)
chr4 (1-262)||(14818058-14818319)
chr4 (4-252)||(14283902-14284150)
chr4 (37-234)||(13712036-13712235)
chr4 (37-234)||(13701543-13701742)
chr4 (1-47)||(28085792-28085838)
chr4 (1-46)||(10667439-10667484)
chr4 (1-46)||(10881584-10881629)
chr4 (1-46)||(24698021-24698066)
[»] chr2 (2 HSPs)
chr2 (1-229)||(21339413-21339641)
chr2 (1-173)||(21889353-21889525)
[»] chr7 (1 HSPs)
chr7 (29-236)||(20920684-20920892)
[»] chr1 (4 HSPs)
chr1 (46-236)||(22219198-22219388)
chr1 (1-46)||(8046269-8046314)
chr1 (1-50)||(43517480-43517529)
chr1 (1-48)||(10216839-10216886)
[»] chr3 (4 HSPs)
chr3 (1-48)||(383122-383169)
chr3 (1-46)||(19242900-19242945)
chr3 (1-46)||(21949776-21949821)
chr3 (1-47)||(22805014-22805060)
[»] scaffold0158 (1 HSPs)
scaffold0158 (31-236)||(292-499)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-47)||(1905-1951)
[»] chr5 (1 HSPs)
chr5 (1-49)||(21492998-21493046)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 14733989 - 14734253
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14733989 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggtcgactaagatcgtgccatgggtcattagatttcaac 14734088  T
Q  101 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  14734089 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgggagttataattgatgt 14734188  T
Q  201 ctgagagctgaataggacctaggaggaacgaagcgtgtgattgagatgaactaggaagtaagaac 265  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14734189 ctgagagctgaataggacctaggaggaacgaagcgtgtgatggagatgaactaggaagtaagaac 14734253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 15594610 - 15594838
Alignment:
Q  5 cacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaac 104  Q
    ||||| |||| | ||||| |||| ||||||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||| |||||||||||     
T  15594610 cacatgctaactattctagatacatttagtatgggtgttacatttggtatcagagcaggtcgattcagatcgtgccatgagtcattaaatttcaactaat 15594709  T
Q  105 gtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctga 204  Q
    ||||||| |||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||||  | | |||||||| ||  |||||||||    
T  15594710 gtagtggggccattgggttccggatatttattctaagtgtcgttactagctgagcctgatcaactcaatctagtatatgacagttagaaaagatgtctga 15594809  T
Q  205 gagctgaataggacctaggaggaacgaag 233  Q
    |||||||||| ||||||||||||||||||    
T  15594810 gagctgaatatgacctaggaggaacgaag 15594838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 31130987 - 31131211
Alignment:
Q  4 gcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaa 103  Q
    |||||| |||||| ||||| |||  ||||||||| ||||||||||||||||||||| |||| || | |||||||||| || || |||||| |||||  ||    
T  31130987 gcacatgctaaatattctagataaatttagtatgtgtgttacatttggtatcagagcaggtcgattcagatcgtgccttgagtaattagaattcaatgaa 31131086  T
Q  104 cgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctg 203  Q
    ||||||||  ||||||||||   | |||||||||| | |||  || | || ||||||| ||||||||  ||||  | | ||| |||| |||  |||||||    
T  31131087 cgtagtgggaccattgggtttcagatatttattctgaatgtcattacaaggtgagcctaatcaactctgtctagtatatgacggttaaaatgaatgtctg 31131186  T
Q  204 agagctgaataggacctaggaggaa 228  Q
    |||||||||||||||||||||||||    
T  31131187 agagctgaataggacctaggaggaa 31131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8887565 - 8887629
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttac-atttggtatcagagaaggt 64  Q
    ||||||||| ||| || ||||| |||  ||||||||||||||||| |||||||||||||||||||    
T  8887565 aatgcacatgctagatattctagataaatttagtatgggtgttacaatttggtatcagagaaggt 8887629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26227582 - 26227537
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||    
T  26227582 aatgcacatactaaactttctagatacgtttagtgtgggcgttaca 26227537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 21653 - 21392
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaac 100  Q
    ||||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||| || | |||||| |||| || |||| || |||||||    
T  21653 aatgcacatgctaaactttctagatacgtttagtgtgggcgttacatttggtatcagagcaggtcgattcagatcgcgccagggatcataaggtttcaac 21554  T
Q  101 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgt 200  Q
    ||| ||||||| |||||||||||| ||  | || ||||||  |||||  |||||||||||||||||||||||||||  ||| |||| ||| ||   ||||    
T  21553 taatgtagtggggccattgggttcgggagaattgttctaaaagttgtaactagctgagcctgatcaactcaatctagtacatgacatttagaacaaatgt 21454  T
Q  201 ctgagagctgaataggacctaggaggaacgaagcgtgtgattgagatgaactaggaagtaag 262  Q
    ||||||||||||||| |||||||||||||||||  |||||| ||||||||||||| ||||||    
T  21453 ctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagtaag 21392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 14818058 - 14818319
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaac 100  Q
    ||||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||| || | |||||| |||| || |||| || |||||||    
T  14818058 aatgcacatgctaaactttctagatacgtttagtgtgggcgttacatttggtatcagagcaggtcgattcagatcgcgccagggatcataaggtttcaac 14818157  T
Q  101 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgt 200  Q
    ||| ||||||| |||||||||||| ||  | || ||||||  |||||  |||||||||||||||||||||||||||  ||| |||| ||| ||   ||||    
T  14818158 taatgtagtggggccattgggttcgggagaattgttctaaaagttgtaactagctgagcctgatcaactcaatctagtacatgacatttagaacaaatgt 14818257  T
Q  201 ctgagagctgaataggacctaggaggaacgaagcgtgtgattgagatgaactaggaagtaag 262  Q
    ||||||||||||||| |||||||||||||||||  |||||| ||||||||||||| ||||||    
T  14818258 ctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagtaag 14818319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 14283902 - 14284150
Alignment:
Q  4 gcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaa 103  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||  ||||||||||    
T  14283902 gcacatgctaaactttctagatacgtttagtatgggtgttacatttggtatcagagcaggtcgattcagatcgtgccatgggtcattaagtttcaactaa 14284001  T
Q  104 cgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctg 203  Q
     |||||||  |||||||||||  ||||  | |||||| ||| |||| || |||||||||||||||||||| || ||  ||||  |||  || |||| |||    
T  14284002 ggtagtgggaccattgggttccaggtagatgttctaattgtagttgttaactgagcctgatcaactcaatttaacattcgacgattaggatggatgcctg 14284101  T
Q  204 agagctgaataggacctaggaggaacgaagcgtgtgattgagatgaact 252  Q
    |||||||||| |||||||||||||||||||  |||||| ||||||||||    
T  14284102 agagctgaatcggacctaggaggaacgaagtatgtgatggagatgaact 14284150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 13712235 - 13712036
Alignment:
Q  37 gggtgttaca-tttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaa-cgtagtggagccattgggttctgggtattta 134  Q
    |||||||||| ||||||||||||| |||| || | |||||||||| ||||||||| || |||||  || |||||||| ||||||| |||  || || |||    
T  13712235 gggtgttacaatttggtatcagagcaggtcgattcagatcgtgccttgggtcattggaattcaataaaacgtagtggggccattgagtttcggataatta 13712136  T
Q  135 ttctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctgagagctgaataggacctaggaggaacgaagc 234  Q
    |||||| |||  |  ||||||||||||||||||||||  |||  | | |||||||| ||   |||| ||||||||||||| ||||||||||||| |||||    
T  13712135 ttctaaatgtcatgtctagctgagcctgatcaactcagactagtatatgacagttagaacaaatgtttgagagctgaataagacctaggaggaatgaagc 13712036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 13701742 - 13701543
Alignment:
Q  37 gggtgttaca-tttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaa-cgtagtggagccattgggttctgggtattta 134  Q
    |||||||||| |||||||| |||| |||| || | |||||||||| ||||||||| || |||||  || |||||||| ||||||| |||  || || |||    
T  13701742 gggtgttacaatttggtataagagcaggtcgattcagatcgtgccttgggtcattggaattcaataaaacgtagtggggccattgagtttcggataatta 13701643  T
Q  135 ttctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctgagagctgaataggacctaggaggaacgaagc 234  Q
    |||||| |||  |  ||||||||||||||||||||||  |||  | | |||||||| ||   |||| ||||||||||||| ||||||||||||| |||||    
T  13701642 ttctaaatgtcatgtctagctgagcctgatcaactcagactagtatatgacagttagaacaaatgtttgagagctgaataagacctaggaggaatgaagc 13701543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28085838 - 28085792
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacat 47  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  28085838 aatgcacatactaaactttctagatacgtttagtgtgggtgttacat 28085792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10667484 - 10667439
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||||    
T  10667484 aatgcacatgctaaattttctagatacgtttagtgtgggcgttaca 10667439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10881629 - 10881584
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||||    
T  10881629 aatgcacatgctaaattttctagatacgtttagtgtgggcgttaca 10881584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24698021 - 24698066
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||    
T  24698021 aatgcacatactaaactttctacatacgtttagtttgggcgttaca 24698066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21339413 - 21339641
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaac 100  Q
    ||||||| | ||||| |||||| ||||||||| |||||| ||||||||||||||||||| |||| || | |||||||||||||||||||||  |||||||    
T  21339413 aatgcacgtgctaaactttctagatacgtttactatgggcgttacatttggtatcagagcaggtcgattcagatcgtgccatgggtcattaagtttcaac 21339512  T
Q  101 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgt 200  Q
    ||| ||||||| || ||||||||| |||||  | |||||  |||||||| ||  ||||||||||||||||||| || ||||||||||||| ||  ||||     
T  21339513 taaagtagtggggctattgggttccgggtaaatgttctagttgttgttgttaattgagcctgatcaactcaatttagcacacgacagttagaacggatgc 21339612  T
Q  201 ctgagagctgaataggacctaggaggaac 229  Q
    ||||||||||||||| |||||||||||||    
T  21339613 ctgagagctgaatagaacctaggaggaac 21339641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 21889353 - 21889525
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaac 100  Q
    ||||||||| ||||| |||||| |||||||||||||||| ||||||||| ||||||||  |||| || | |||||||||||||||||||||  |||||||    
T  21889353 aatgcacatgctaaactttctagatacgtttagtatgggcgttacattttgtatcagatcaggtcgattcagatcgtgccatgggtcattaagtttcaac 21889452  T
Q  101 taacgtagtggagccattgggttctgggtatttattctaagtgttgttgctagctgagcctgatcaactcaat 173  Q
    ||| || | ||  |||||||||||   |||  | |||||| | ||||| |||| |||||||||||||||||||    
T  21889453 taatgtggagggaccattgggttccatgtaaatgttctaactattgttactagttgagcctgatcaactcaat 21889525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 20920684 - 20920892
Alignment:
Q  29 tttagtatgggtgttacatttggtatcagag-aaggttgactaagatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttctgg 127  Q
    |||||||||| ||||||||||||||||||||   |||||| | |||||||| | ||| ||||||||  ||||| || |||||||  |||||||||||  |    
T  20920684 tttagtatggatgttacatttggtatcagagtctggttgattcagatcgtgtcctggatcattagaaatcaacgaatgtagtgggaccattgggttccag 20920783  T
Q  128 gtatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctgagagctgaataggacctaggagga 227  Q
     |||||||| ||| |||  |  |||| |||||||||| |||||||||||    | | |||||| ||| | ||| ||||||||||| ||||||||||||||    
T  20920784 atatttattataaatgtcatatctagttgagcctgataaactcaatctagtttatggcagttagaatagttgtttgagagctgaaaaggacctaggagga 20920883  T
Q  228 acgaagcgt 236  Q
    | |||||||    
T  20920884 atgaagcgt 20920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 236
Target Start/End: Complemental strand, 22219388 - 22219198
Alignment:
Q  46 atttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaac-gtagtggagccattgggttctgggtatttattctaagtgt 144  Q
    |||||||||||||| |||| || | |||||||||| |||||||||||| |||||  ||  | |||||  |||||| |||| || |||||||||||| |||    
T  22219388 atttggtatcagagcaggtcgattcagatcgtgcc-tgggtcattagaattcaataaaatgcagtgggaccattgagttccggatatttattctaaatgt 22219290  T
Q  145 tgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctgagagctgaataggacctaggaggaacgaagcgt 236  Q
      |  ||||||||||||||||||||||  |||  | | || ||||| ||    ||||||||||||||||||| ||||||||||| |||||||    
T  22219289 catgtctagctgagcctgatcaactcagactagtatatgatagttagaacaagtgtctgagagctgaatagggcctaggaggaatgaagcgt 22219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8046314 - 8046269
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  8046314 aatgcacatactaaactttctagatacgtttagtatgggtgttaca 8046269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43517480 - 43517529
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatttg 50  Q
    ||||||||| ||||| |||||| |||||||||||||| ||||||||||||    
T  43517480 aatgcacatgctaaactttctagatacgtttagtatgagtgttacatttg 43517529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10216839 - 10216886
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatt 48  Q
    ||||||||| ||||| |||||||||||||||||| |||| ||||||||    
T  10216839 aatgcacatgctaaactttctatatacgtttagtgtgggcgttacatt 10216886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 383122 - 383169
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacatt 48  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  383122 aatgcacatactaaattttctagatacgtttagtatgagtgttacatt 383169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19242945 - 19242900
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||    
T  19242945 aatgcacatgctaaactttctagatacgtttagtatgggtgttaca 19242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21949821 - 21949776
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttaca 46  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||    
T  21949821 aatgcacatactaaactttctagatacgtttagaatgggtgttaca 21949776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22805060 - 22805014
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacat 47  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||    
T  22805060 aatgcacatactaaactttctagatacgtttagtgtgggcgttacat 22805014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 292 - 499
Alignment:
Q  31 tagtatgggtgttaca-tttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaactaac-gtagtggagccattgggttctggg 128  Q
    ||||| |||||||||| ||||||||||||| |||| || | ||||||| || ||| |||||||| |||||  ||  | ||||   ||| ||||||| ||     
T  292 tagtaggggtgttacaatttggtatcagagcaggtcgattcagatcgtaccttggatcattagaattcaataaaatgcagtgagaccactgggttccgga 391  T
Q  129 tatttattctaagtgttgttgctagctgagcctgatcaactcaatctatcacacgacagttataattgatgtctgagagctgaataggacctaggaggaa 228  Q
    |||||||||||| |||  |  |||| ||||||||||||||||  ||||  | | ||||||||  |   || | |||||||||||||||||||||||||||    
T  392 tatttattctaaatgtcatatctagttgagcctgatcaactcggtctagtatatgacagttaggacaaatttttgagagctgaataggacctaggaggaa 491  T
Q  229 cgaagcgt 236  Q
     |||||||    
T  492 tgaagcgt 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1905 - 1951
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacat 47  Q
    ||||||||| ||||| |||||| | ||||||||||||||||||||||    
T  1905 aatgcacatgctaaactttctagaaacgtttagtatgggtgttacat 1951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21493046 - 21492998
Alignment:
Q  1 aatgcacatactaaattttctatatacgtttagtatgggtgttacattt 49  Q
    ||||||||| ||||| |||||| ||| |||||||||||| |||||||||    
T  21493046 aatgcacatgctaaactttctacatatgtttagtatgggcgttacattt 21492998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University