View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_1 (Length: 566)
Name: NF8558_low_1
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 272 - 444
Target Start/End: Complemental strand, 11199193 - 11199018
Alignment:
| Q |
272 |
gtagagtaaccttcttaagggagagtgccaagtgtttactgtcaggcttcttagtaggcatagaatcaagatggtcacgtgcaaattggaaagcatgttt |
371 |
Q |
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| T |
11199193 |
gtagagtaaccttcttaagggagagtgccaagtgtttactgtcaggcttcttagtaggcatagaatcaagatggtcacgtgcaaattggaaagcatgttt |
11199094 |
T |
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| Q |
372 |
ctgcaaaggaagagacatgtcacaagctttgacatgaatgctgtt---gttgagtttaatattatttttataatca |
444 |
Q |
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| T |
11199093 |
ctgcaaaggaagagacatgtcacaagctttgacatgaatgctgttgttgttgagtttaatattatttttataatca |
11199018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 11199396 - 11199225
Alignment:
| Q |
69 |
ttaaagtgatttatgtttgagtatattcatctaaggctaaaccttaaaattctagttcaaaacatgtaaaatcaactctacacctttaaaatcaatctgt |
168 |
Q |
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| T |
11199396 |
ttaaagtgatttatgtttcagtatattcatctaaggctaaaccttaaaattctagttccaaacatgtaaaatcaactccacacctttaaaatcaatctgt |
11199297 |
T |
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| Q |
169 |
cacctccaaatgtttcagctgaagccaaatcaaaacagttttcaacaaatcatggatcaaagatcacaaccc |
240 |
Q |
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| T |
11199296 |
cacctccaaatgtttcagctgaagccaagtcaaaacagttttcaacaaatcatggatcaaagatcacaaccc |
11199225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11199492 - 11199430
Alignment:
| Q |
1 |
caaaaataatagccaatctatgtgtctgattctccaataacaaaaattgattttgaatgaact |
63 |
Q |
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| T |
11199492 |
caaaaataatagccaatctatgtgtcagattctccaataacaaaaattgattttgaatgaact |
11199430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 11198954 - 11198904
Alignment:
| Q |
508 |
atcaaactgtttagaaacttgctccttctctctaactccttctctgcttct |
558 |
Q |
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| T |
11198954 |
atcaaactgtttagaaacttgctccttctctctaactccttctctgcttct |
11198904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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