View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_13 (Length: 253)
Name: NF8558_low_13
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4163929 - 4163696
Alignment:
| Q |
1 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163929 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
4163830 |
T |
|
| Q |
101 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaatttgggatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4163829 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctagatcaacaatttgggatag |
4163730 |
T |
|
| Q |
201 |
tttcactcaccctgcggatgccgctgttccaacg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4163729 |
tttcactcaccctgcggatgccgctgttccaacg |
4163696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4134765 - 4134541
Alignment:
| Q |
1 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
4134765 |
gatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtatcatcatttggtcaacaa |
4134666 |
T |
|
| Q |
101 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaatttgggatag |
200 |
Q |
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| T |
4134665 |
acatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctgggatag |
4134572 |
T |
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| Q |
201 |
tttcactcaccctgcggatgccgctgttcca |
231 |
Q |
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|||||| |||||||| ||| | ||||||||| |
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| T |
4134571 |
tttcacacaccctgcagattcagctgttcca |
4134541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4145567 - 4145343
Alignment:
| Q |
1 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
4145567 |
gatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggcagcatcatttggtcaacaa |
4145468 |
T |
|
| Q |
101 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaatttgggatag |
200 |
Q |
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| T |
4145467 |
acatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctgggatag |
4145374 |
T |
|
| Q |
201 |
tttcactcaccctgcggatgccgctgttcca |
231 |
Q |
| |
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|||||| |||||| | ||| | ||||||||| |
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| T |
4145373 |
tttcacacacccttcagattcagctgttcca |
4145343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4124220 - 4123994
Alignment:
| Q |
1 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||| |
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| T |
4124220 |
gatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtcaacaa |
4124121 |
T |
|
| Q |
101 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaatttgggatag |
200 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||||||| ||||||| |||||||| |
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| T |
4124120 |
acatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatag |
4124027 |
T |
|
| Q |
201 |
tttcactcaccctgcggatgccgctgttccaac |
233 |
Q |
| |
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|||||| |||||||| ||||| ||||||||||| |
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|
| T |
4124026 |
tttcacacaccctgcagatgcagctgttccaac |
4123994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4153570 - 4153344
Alignment:
| Q |
1 |
gatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtcaacaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||||| || || |||||||||| |
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| T |
4153570 |
gatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatggtgttattatatggtcaacaa |
4153471 |
T |
|
| Q |
101 |
gcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaatttgggatag |
200 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| ||| ||||||| |||||||| |
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| T |
4153470 |
acatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagcaacaatctgggatag |
4153377 |
T |
|
| Q |
201 |
tttcactcaccctgcggatgccgctgttccaac |
233 |
Q |
| |
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|||||| |||||||| ||||| ||||||||||| |
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|
| T |
4153376 |
tttcacacaccctgcagatgcagctgttccaac |
4153344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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