View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_14 (Length: 250)
Name: NF8558_low_14
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41793904 - 41794145
Alignment:
| Q |
1 |
acactttttaaccgttcatttatctcactgttttaatcaacggttttagatttcttcaattttctagaaggaagtgcatgcgtgacagttaactgagata |
100 |
Q |
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| T |
41793904 |
acactttttaaccgttcatttatctcactgttttaatcaacggttttagatttcttcaattttctagaaggaagtgcatgcgtgacagttaactgagata |
41794003 |
T |
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| Q |
101 |
tgaagggtgggtatgtaatttcagaaatgttgaaggattattacacaatgatgatgaagttgtgtgtgataagaattggtgtatgatgtactgtagtatt |
200 |
Q |
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| T |
41794004 |
agaagggtgggtatgtaatttcagaaatgttgaaggattgttacacaatgatgatgaagttgtgtgtggtaagaattggtgtatgatgtactgtagtatt |
41794103 |
T |
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| Q |
201 |
cgccttaaaattttattattaaattcatgagatatctctgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41794104 |
cgccttaaaattttattattaaattcatgagatatcactgct |
41794145 |
T |
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