View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_15 (Length: 247)
Name: NF8558_low_15
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 6328427 - 6328324
Alignment:
| Q |
6 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
105 |
Q |
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| T |
6328427 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
6328328 |
T |
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| Q |
106 |
taag |
109 |
Q |
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|||| |
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| T |
6328327 |
taag |
6328324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 6335985 - 6335882
Alignment:
| Q |
6 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6335985 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
6335886 |
T |
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| Q |
106 |
taag |
109 |
Q |
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|||| |
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| T |
6335885 |
taag |
6335882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 6350970 - 6350867
Alignment:
| Q |
6 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
105 |
Q |
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| T |
6350970 |
tttggtgttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctg |
6350871 |
T |
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| Q |
106 |
taag |
109 |
Q |
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|||| |
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| T |
6350870 |
taag |
6350867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6489045 - 6489141
Alignment:
| Q |
12 |
gttgaagatgcacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
108 |
Q |
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| T |
6489045 |
gttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
6489141 |
T |
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