View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_17 (Length: 242)
Name: NF8558_low_17
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 37113607 - 37113829
Alignment:
| Q |
20 |
ccaccaattcagtgtcttcttcatctcattcccactcctagccttaatctccaccagctctgcatgatcactggatcgtttcaacaaacgatccttcaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37113607 |
ccaccaattcagtgtcttcttcatctcattcccactcctagccttaatctccaccagctctgcatgatcactggatcgtttcaacaaacgatccttcaac |
37113706 |
T |
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| Q |
120 |
cggtaaggtgtttccatgacagattttccatagttttcccaactcttaaacgactcctctgggaagaagtcgnnnnnnngaaacgtacatcctctcctac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37113707 |
cggtaaggtgtttccatgacagattttccatagttttcccaactcttaaacgactcctctgggaagaagtcgtttttttgaaacgtacatcctctcctac |
37113806 |
T |
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| Q |
220 |
gtactccgccgccatcgaccacc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
37113807 |
gtactccgccgccatcgaccacc |
37113829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 37126345 - 37126557
Alignment:
| Q |
20 |
ccaccaattcagtgtcttcttcatctcattcccactcctagccttaatctccaccagctctgcatgatcactggatcgtttcaacaaacgatccttcaac |
119 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37126345 |
ccaccagttcagcgtcttcttcatctcattcccactcctagccttaatctccaccagctctgcatgatcactggatcgtttcaacaaacgatccttcaac |
37126444 |
T |
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| Q |
120 |
cggtaaggtgtttccatgacagattttccatagttttcccaactcttaaacgactcctctgggaagaagtcgnnnnnnngaaacgtacatcctctcctac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
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| T |
37126445 |
cggtaaggtgtttccatgacagattttccatagttttcccaactcttaaacgactcctccgggaagaagtcgtttgtttgaaacgtacatcctcttctac |
37126544 |
T |
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| Q |
220 |
gtactccgccgcc |
232 |
Q |
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||||||| ||||| |
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| T |
37126545 |
gtactcctccgcc |
37126557 |
T |
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Back To:
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