View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8558_low_19 (Length: 239)
Name: NF8558_low_19
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6458055 - 6457832
Alignment:
| Q |
1 |
agagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6458055 |
agagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctca |
6457956 |
T |
|
| Q |
101 |
aaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6457955 |
aaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtggg |
6457856 |
T |
|
| Q |
201 |
attaagcttcctacagatatactt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6457855 |
attaagcttcctacagatatactt |
6457832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6451965 - 6451743
Alignment:
| Q |
1 |
agagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctca |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| || |
|
|
| T |
6451965 |
agagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagtcattgtcaca |
6451866 |
T |
|
| Q |
101 |
aaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtggg |
200 |
Q |
| |
|
| | || | || ||||| ||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6451865 |
agacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtgga |
6451766 |
T |
|
| Q |
201 |
attaagcttcctacagatatact |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6451765 |
attaagcttcctacagatatact |
6451743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7460225 - 7460176
Alignment:
| Q |
21 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactt |
70 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7460225 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactt |
7460176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7471801 - 7471752
Alignment:
| Q |
21 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactt |
70 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7471801 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactt |
7471752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 9603373 - 9603591
Alignment:
| Q |
3 |
agtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctcaaa |
102 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9603373 |
agtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcattgtctcaag |
9603472 |
T |
|
| Q |
103 |
atgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggactt-ttcgaaggtggga |
201 |
Q |
| |
|
|||| |||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||||||||||||| ||| ||||| || |||||||| | |
|
|
| T |
9603473 |
atgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaagtgcgt-gacttatttgaaggtggaa |
9603571 |
T |
|
| Q |
202 |
ttaagcttcctacagatata |
221 |
Q |
| |
|
|| | ||||||||| ||||| |
|
|
| T |
9603572 |
ttgaacttcctacacatata |
9603591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 9589103 - 9589163
Alignment:
| Q |
32 |
aagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatca |
92 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| |
|
|
| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttccttacatacggattaaaatca |
9589163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 42687709 - 42687776
Alignment:
| Q |
24 |
tatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
42687709 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatc |
42687776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 42694120 - 42693924
Alignment:
| Q |
28 |
ttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgt |
127 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| || |||| |||||| | ||| || | ||||||||||| | || || | ||||| |
|
|
| T |
42694120 |
ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaatgtggtccctgcattagagtctgt |
42694021 |
T |
|
| Q |
128 |
gatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatatactt |
224 |
Q |
| |
|
|| ||||| | |||||||||||||||||||| |||||||| |||||||| | |||| | | || ||||| |||||||| || |||||| ||||| |
|
|
| T |
42694020 |
aatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtactt |
42693924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University