View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_2 (Length: 446)
Name: NF8558_low_2
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 41793922 - 41793695
Alignment:
| Q |
16 |
atgaacggttaaaaagtgtatgaagtgattgaagtggagcatagaagtgtgaacatagtaaaaaagtgataagtctgaaacgcagatataaagcagtaac |
115 |
Q |
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| T |
41793922 |
atgaacggttaaaaagtgtatgaagtgattgaagtgtagcatagaagtgtgaacatagtaaaaaagtgaaaagtctgaaacgcagatataaagcagtaat |
41793823 |
T |
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| Q |
116 |
gttggggtctttatcgctgcctcaactcaagactctgaactcgtatctagggtttgtactttgcagaagaaaatgaacttatcataatcgtcactcactt |
215 |
Q |
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| T |
41793822 |
gttggggtctttatcgctgcctcaactcaagactctgaactcgtatctagggtttgtactttgcagaagaaaatgaacttatcataatcatcactcactt |
41793723 |
T |
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| Q |
216 |
cttttcactaatttcccattactacaac |
243 |
Q |
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| T |
41793722 |
cttttcactaatttcccattactgcaac |
41793695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 41793618 - 41793518
Alignment:
| Q |
330 |
acaacaactttgtgatggaaaggtccagatctaaacggagttactactatgaccaggattatgattctgaaaccgttgcaagaacaaggccacgttataa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41793618 |
acaacaactttgtgatggaaaggtccagatctaaacggagttactactatgaccaggattatgattctgaaaccgttgcaagaacaaggccacgttataa |
41793519 |
T |
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| Q |
430 |
c |
430 |
Q |
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| T |
41793518 |
c |
41793518 |
T |
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