View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8558_low_21 (Length: 227)
Name: NF8558_low_21
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 54262582 - 54262367
Alignment:
| Q |
1 |
atcagtcatcctaagtttcacatctaaatgaagcagcaacattgtagttgtaacatgcaagcatagtacacttggtttgccttgcagttgatactctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54262582 |
atcagtcatcctaagtttcacatctaaatgaagcagcaacattgtagttgtaacatgcaagcatagtacatttggtttgccttgcagttgatactctatt |
54262483 |
T |
|
| Q |
101 |
gtagctcataattaccaatacatcgtcttattagttgtagtagaaaactaggtgcgtgcataccaacaattcttcaacgcttcgatgaatgaaattcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54262482 |
gtagctcataattaccaatacatcgtcttattagttgtagtagaaaactaggtgcgtgcataccaacaattcttcaatgcttcgatgaatgaaattcttc |
54262383 |
T |
|
| Q |
201 |
aatgcttcatgttcat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
54262382 |
aatgcttcatgttcat |
54262367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University