View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8558_low_3 (Length: 421)
Name: NF8558_low_3
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 11199478 - 11199867
Alignment:
| Q |
1 |
tggctattatttttgtcgtactcatgtttcattgacaaattagaaaaatttatcattgnnnnnnnnnaaaactcggtattcgatccgatgattgaccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
11199478 |
tggctattatttttgtcgtactcatgtttcattgacaaattagaaaaacttatcattgtttttttttaaaactcggtattcgatccgatgattgatcaag |
11199577 |
T |
|
| Q |
101 |
tcaggagaccagtctcaccatccactaataagggccccaattaaagccaaagcaaaagcctacataaattggcaccgggagaaatcaaacatgagacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11199578 |
tcaggagaccagtctcaccatccactaataagggccccaattaaagccaaagcaaaagcctacataaattggcaccgggagaaaacaaacatgagacctt |
11199677 |
T |
|
| Q |
201 |
gaaagaaatacactccaagggttccaaacacattccaaacctttgaaagaaacatactccaatgcccaaagcaatttaacatgagccaccatgttgcaaa |
300 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199678 |
gaaagaaatatactccaagggtcccaaacacactccaaacctttgaaagaaacatactccaatgcccaaagcaatttaacatgagccaccatgttgcaaa |
11199777 |
T |
|
| Q |
301 |
gttatgatggctcgccgtgatttcaacaaactcatcttgataccaaacatgcactaagcttgattctgtttctttgtctatcttgatgat |
390 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199778 |
gttatgatggctcgccgtgatttcagcaaactcatcttgataccaaacatgcactaagcttgattctgtttctttgtctatcttgatgat |
11199867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University