View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_5 (Length: 379)
Name: NF8558_low_5
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_5 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 26398408 - 26398744
Alignment:
| Q |
22 |
ttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
121 |
Q |
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| T |
26398408 |
ttttaatacaggggaatcacatgcattgacaaagaggagagcaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
26398507 |
T |
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| Q |
122 |
aacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaa |
221 |
Q |
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| T |
26398508 |
aacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcagaatggcagagcttctgatagttgaaa |
26398599 |
T |
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| Q |
222 |
caacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgtt |
321 |
Q |
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| T |
26398600 |
caacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-aaaaaaaaaaaaacaattaaatgtgtt |
26398698 |
T |
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| Q |
322 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
367 |
Q |
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| T |
26398699 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
26398744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 277803 - 278140
Alignment:
| Q |
22 |
ttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277803 |
ttttaatacaggggaatcacatgcattgacaatgaggagatcaaaattgtatcttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
277902 |
T |
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| Q |
122 |
aacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaa |
221 |
Q |
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| T |
277903 |
aacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacaatggcagaatggtagagcttctgatagttgaaa |
277994 |
T |
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| Q |
222 |
caacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgtt |
321 |
Q |
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| T |
277995 |
caacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattaaaaaaaataaaaacaattaaatgtgtt |
278094 |
T |
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| Q |
322 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
367 |
Q |
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| T |
278095 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
278140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 30693 - 31029
Alignment:
| Q |
22 |
ttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30693 |
ttttaatacaggggaatcacatgcattgacaatgaggagaacaaaagtgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaa |
30792 |
T |
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| Q |
122 |
aacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaa |
221 |
Q |
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| T |
30793 |
aacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcagaatggcagagcttctgatagttgaaa |
30884 |
T |
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| Q |
222 |
caacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgtt |
321 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
30885 |
caacgatgtgctcgataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-aaaaaaataaaaacaattaaacgtgtt |
30983 |
T |
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| Q |
322 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
367 |
Q |
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| T |
30984 |
gattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
31029 |
T |
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