View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8558_low_6 (Length: 340)

Name: NF8558_low_6
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8558_low_6
NF8558_low_6
[»] chr2 (13 HSPs)
chr2 (19-330)||(19243446-19243757)
chr2 (198-259)||(15370240-15370301)
chr2 (185-243)||(32615997-32616055)
chr2 (145-210)||(14209240-14209305)
chr2 (189-253)||(22878181-22878245)
chr2 (145-183)||(2416276-2416314)
chr2 (189-263)||(15120266-15120340)
chr2 (200-253)||(13866972-13867025)
chr2 (189-266)||(30331835-30331911)
chr2 (198-243)||(43199927-43199972)
chr2 (199-243)||(17443541-17443585)
chr2 (191-251)||(25800594-25800654)
chr2 (199-243)||(42852635-42852679)
[»] chr1 (17 HSPs)
chr1 (185-253)||(4549464-4549532)
chr1 (200-267)||(24460310-24460377)
chr1 (185-266)||(5157151-5157232)
chr1 (185-265)||(23373224-23373304)
chr1 (189-250)||(27807198-27807259)
chr1 (198-253)||(6292584-6292639)
chr1 (189-259)||(32515358-32515428)
chr1 (205-243)||(44815236-44815274)
chr1 (114-182)||(46499924-46499991)
chr1 (201-252)||(5924108-5924159)
chr1 (198-261)||(33723297-33723360)
chr1 (189-243)||(9507314-9507368)
chr1 (231-268)||(19605215-19605252)
chr1 (185-258)||(33976257-33976330)
chr1 (199-263)||(3597194-3597258)
chr1 (190-250)||(12564425-12564485)
chr1 (189-233)||(41638251-41638295)
[»] chr8 (15 HSPs)
chr8 (204-266)||(43368610-43368672)
chr8 (191-266)||(14926892-14926967)
chr8 (189-242)||(24326114-24326167)
chr8 (199-258)||(37353090-37353149)
chr8 (188-259)||(38602410-38602480)
chr8 (200-255)||(43208077-43208132)
chr8 (125-183)||(4558742-4558799)
chr8 (145-183)||(42237491-42237529)
chr8 (200-261)||(778483-778544)
chr8 (189-242)||(8535989-8536042)
chr8 (189-234)||(26410363-26410408)
chr8 (146-183)||(35374442-35374479)
chr8 (199-243)||(2364393-2364437)
chr8 (189-253)||(2487931-2487995)
chr8 (176-253)||(12361262-12361341)
[»] chr7 (16 HSPs)
chr7 (185-265)||(1418498-1418578)
chr7 (185-253)||(30751598-30751666)
chr7 (201-264)||(29363603-29363666)
chr7 (185-243)||(48157053-48157111)
chr7 (174-253)||(5620075-5620154)
chr7 (198-253)||(9210914-9210968)
chr7 (175-249)||(31002808-31002882)
chr7 (189-243)||(36598289-36598343)
chr7 (189-243)||(43854974-43855028)
chr7 (216-253)||(2727281-2727318)
chr7 (134-183)||(48157189-48157237)
chr7 (193-253)||(8427100-8427160)
chr7 (189-253)||(22387819-22387883)
chr7 (202-258)||(28691754-28691810)
chr7 (201-253)||(31751682-31751734)
chr7 (191-243)||(37064147-37064199)
[»] chr4 (16 HSPs)
chr4 (189-251)||(18628478-18628540)
chr4 (198-262)||(15173217-15173280)
chr4 (145-183)||(51630074-51630112)
chr4 (185-253)||(1017107-1017175)
chr4 (186-250)||(2811551-2811615)
chr4 (189-253)||(46860001-46860065)
chr4 (199-258)||(50298608-50298667)
chr4 (176-251)||(54277248-54277323)
chr4 (189-243)||(2996656-2996710)
chr4 (200-253)||(1312935-1312988)
chr4 (176-253)||(25896854-25896931)
chr4 (200-243)||(2236915-2236956)
chr4 (189-233)||(22471357-22471401)
chr4 (218-258)||(27043748-27043788)
chr4 (185-253)||(41097180-41097247)
chr4 (189-259)||(53943689-53943756)
[»] chr6 (13 HSPs)
chr6 (190-243)||(32171551-32171604)
chr6 (176-243)||(32848529-32848596)
chr6 (189-255)||(33067241-33067307)
chr6 (176-243)||(8420130-8420197)
chr6 (118-172)||(31624195-31624248)
chr6 (216-258)||(33068520-33068562)
chr6 (134-171)||(2112153-2112190)
chr6 (200-249)||(3180996-3181045)
chr6 (126-183)||(9093625-9093681)
chr6 (189-258)||(24333021-24333090)
chr6 (189-234)||(26177246-26177291)
chr6 (187-243)||(24973960-24974016)
chr6 (198-266)||(35070377-35070445)
[»] chr5 (11 HSPs)
chr5 (125-183)||(41819556-41819613)
chr5 (213-258)||(34205348-34205393)
chr5 (219-259)||(17369316-17369356)
chr5 (187-266)||(4855776-4855855)
chr5 (114-181)||(9202819-9202885)
chr5 (176-259)||(28586683-28586766)
chr5 (123-181)||(7674590-7674647)
chr5 (189-251)||(10303879-10303941)
chr5 (189-243)||(15015927-15015980)
chr5 (177-258)||(42181003-42181084)
chr5 (198-258)||(31208564-31208624)
[»] chr3 (12 HSPs)
chr3 (199-253)||(21872218-21872272)
chr3 (125-182)||(42808923-42808979)
chr3 (189-250)||(45590734-45590795)
chr3 (218-265)||(16072952-16072999)
chr3 (200-243)||(22667497-22667540)
chr3 (200-243)||(22724136-22724179)
chr3 (125-183)||(32703082-32703139)
chr3 (126-179)||(15304420-15304472)
chr3 (125-182)||(42809245-42809301)
chr3 (217-253)||(2081006-2081042)
chr3 (189-253)||(20194956-20195020)
chr3 (180-252)||(33965412-33965484)
[»] scaffold0024 (1 HSPs)
scaffold0024 (176-241)||(27646-27711)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 19243446 - 19243757
Alignment:
Q  19 gatcttgtgttcgctgaaagctttgtttaaccaaatataataggaagtcactaataatacaatattacgaccctgtttggataaggagcttaatgaagtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  19243446 gatcttgtgttcgctgaaagctttgtttaaccaaatataataggaagtcactaataatacaatattacgaccctgtttggatacggagcttaattaagtg 19243545  T
Q  119 cttgtatataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagctacttctataagctcgcccaaacagtctcagaaatgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  19243546 cttgtatataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagctgtttctataagctcgcccaaacagtctcagaaatgc 19243645  T
Q  219 ttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaaatcaaaactaaactgttaggttaggtctacgcgcctgcttgttgacatgctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19243646 ttatgtcagtagataagttcaaatatgtcaatccatacaggccctaaaatcaaaactaaactgttaggttaggtctacgcgcctgcttgttgacatgctt 19243745  T
Q  319 acgatttctctg 330  Q
    ||||||||||||    
T  19243746 acgatttctctg 19243757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 15370301 - 15370240
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| |||||    
T  15370301 cccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacagg 15370240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 32615997 - 32616055
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||| | |||||||||||| |||||||||||||||  ||||||||||||||    
T  32615997 ttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaata 32616055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 14209240 - 14209305
Alignment:
Q  145 aaaagataaaataaatttaaattgttttgatataagctacttctataagctcgcccaaacagtctc 210  Q
    ||||||||||||||||| ||| |||||| |||||||||| ||| |||||||| ||||| |||||||    
T  14209240 aaaagataaaataaattcaaactgttttcatataagctatttccataagctctcccaagcagtctc 14209305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 22878181 - 22878245
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||| || |||||||||||||| || ||||||||||||| |||||| ||||||| |||||||||    
T  22878181 ataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatcca 22878245  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 2416276 - 2416314
Alignment:
Q  145 aaaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||||||| || |||||||||||||||||||||||    
T  2416276 aaaagataaaatgaagttaaattgttttgatataagcta 2416314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 15120266 - 15120340
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcct 263  Q
    |||||||| |||||||||  ||| || || |||||  |||||||||||||||||| ||||||||| |||| ||||    
T  15120266 ataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaacagatcct 15120340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 13866972 - 13867025
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||||||| || || ||||| ||||||||||| ||||||| |||||||||    
T  13866972 caaacagtctcacaagtgtttatggcagtagataagctcaaataggtcaatcca 13867025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 30331835 - 30331911
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    ||||| || |||||||||||||| |||  |||||||||||||||||| | ||||| ||||||||| ||| | ||||||    
T  30331835 ataagttctcccaaacagtctcacaaaa-cttatgtcagtagataagctgaaataagtcaatccaaacaagccctaaa 30331911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 43199927 - 43199972
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||||| || ||||||| | ||||||||||||||||||    
T  43199927 cccaaacagtctcacaagtgcttatatgagtagataagttcaaata 43199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 17443585 - 17443541
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||||||||| || ||||||| |||||| |||||||||||||    
T  17443585 ccaaacagtctcacaagtgcttatatcagtatataagttcaaata 17443541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 25800654 - 25800594
Alignment:
Q  191 aagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatc 251  Q
    |||||| ||||||||||||||  | |||| | || |||||||||||||||||| |||||||    
T  25800654 aagctctcccaaacagtctcacgagtgctcacgttagtagataagttcaaataagtcaatc 25800594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 42852679 - 42852635
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||||||||| || |||||||| ||| |||||||||||||||    
T  42852679 ccaaacagtctcacaagtgcttatgccagcagataagttcaaata 42852635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 4549532 - 4549464
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||  ||||||| | |||||||    
T  4549532 ttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatcca 4549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 24460377 - 24460310
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaaa 267  Q
    |||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  24460377 caaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaacaggccctaaaa 24460310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 5157151 - 5157232
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    |||||||||||| |||||||||| ||| || || ||||||| ||||||||||||||||| ||||||||| | || |||||||    
T  5157151 ttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaatagatcctaaa 5157232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 23373304 - 23373224
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaa 265  Q
    |||||||||||| |||||||| ||||| || ||||||| |||||||| ||||||||||| |||||| || ||||| |||||    
T  23373304 ttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaacaggccctaa 23373224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 27807198 - 27807259
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaat 250  Q
    |||||||| | |||||||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  27807198 ataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaat 27807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 6292584 - 6292639
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| ||||| || |||||||||||||||||||| ||||||| |||||||||    
T  6292584 cccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatcca 6292639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 32515428 - 32515358
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    |||||||| |||||||||||||| || ||||||||| |||||||||  |||||||||  |||||| |||||    
T  32515428 ataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaacagg 32515358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 44815274 - 44815236
Alignment:
Q  205 agtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  44815274 agtctcacaaatgcttatgtcagtagataagttcaaata 44815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 46499991 - 46499924
Alignment:
Q  114 aagtgcttgtatataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagct 182  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||| | |||||||||| || ||||||    
T  46499991 aagtgcttatctataagctatttctataa-gaaaagataaaataaagtcaaattgtttttatttaagct 46499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 5924108 - 5924159
Alignment:
Q  201 aaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcc 252  Q
    ||||||||| | |||||| |||||||||| ||||||||||||| ||||||||    
T  5924108 aaacagtcttacaaatgcgtatgtcagtaaataagttcaaataagtcaatcc 5924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 33723360 - 33723297
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtc 261  Q
    ||||| |||||||| || || |||||  |||||||||||||||||| ||||||||| |||||||    
T  33723360 cccaagcagtctcacaagtgtttatggtagtagataagttcaaataagtcaatccaaacaggtc 33723297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 9507314 - 9507368
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| |||||||||||||| |||||| ||||  |||||||||| |||||||    
T  9507314 ataagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaata 9507368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 19605215 - 19605252
Alignment:
Q  231 ataagttcaaatatgtcaatccatacaggtcctaaaat 268  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  19605215 ataagctcaaataagtcaatccatacaggtcctaaaat 19605252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 33976257 - 33976330
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||||||  |||||| |||||| || |||| |||||| || ||||| ||||||| ||||||||| ||||    
T  33976257 ttctataagctcaaccaaactgtctcacaagtgctgatgtcattaaataagctcaaataagtcaatccaaacag 33976330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 3597258 - 3597194
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcct 263  Q
    ||||||||||||| || || |||| ||| |||||||  ||||||| ||||||||| |||||||||    
T  3597258 ccaaacagtctcacaagtggttatatcattagataacctcaaataagtcaatccaaacaggtcct 3597194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 12564485 - 12564425
Alignment:
Q  190 taagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaat 250  Q
    ||||||| ||||||||||| || || ||||||| |||||| ||||| ||||||| ||||||    
T  12564485 taagctctcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagtcaat 12564425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 41638295 - 41638251
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagata 233  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||    
T  41638295 ataatctctcccaaacagtctcacaaatgcttatgccagtagata 41638251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 43368672 - 43368610
Alignment:
Q  204 cagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    |||||||| |||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||    
T  43368672 cagtctcacaaatgcttatgttagtagataagatcaaataagtcaatccaaacaggtcctaaa 43368610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 14926967 - 14926892
Alignment:
Q  191 aagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    |||||| | |||||||||||| || |||||||| ||||| ||||||||||||| ||||||||| ||| | ||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaacaagccctaaa 14926892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 24326114 - 24326167
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaat 242  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||| ||||||    
T  24326114 ataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 37353149 - 37353090
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||||||| || |||||||||||||||||| ||||| ||| ||| ||||| ||||    
T  37353149 ccaaacagtctcacaagtgcttatgtcagtagataggttcagataagtcgatccaaacag 37353090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 38602410 - 38602480
Alignment:
Q  188 tataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    |||||| || ||||||||| |||| |||  |||||||||||||||||| ||||||| ||||||||| |||||    
T  38602410 tataagttctcccaaacagcctcacaaaa-cttatgtcagtagataagctcaaataagtcaatccaaacagg 38602480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 43208132 - 43208077
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccata 255  Q
    ||||||||||||| | ||  |||||||||||||||||||||||| |||||| ||||    
T  43208132 caaacagtctcagtagtgtgtatgtcagtagataagttcaaataagtcaattcata 43208077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 4558742 - 4558799
Alignment:
Q  125 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||| |||||||||| ||||||||||||||| ||||||| |||| ||||| ||||    
T  4558742 tataagctatttctataat-aaaagataaaataaagttaaattattttcatatatgcta 4558799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 42237529 - 42237491
Alignment:
Q  145 aaaagataaaataaatttaaattgttttgatataagcta 183  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  42237529 aaaagataaaataaagttaaattgttttcatataagcta 42237491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 778483 - 778544
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtc 261  Q
    |||||||||||| || ||||||| |||||| |||||| |||||| ||||| ||| |||||||    
T  778483 caaacagtctcacaagtgcttatttcagtaaataagtacaaataagtcaaaccaaacaggtc 778544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 8536042 - 8535989
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaat 242  Q
    |||| ||| |||||||||||||| || | ||||||||||||||||| |||||||    
T  8536042 ataaactctcccaaacagtctcacaagtacttatgtcagtagataaattcaaat 8535989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 26410363 - 26410408
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataa 234  Q
    |||||||| ||||| ||||||||||| ||||||||||||| |||||    
T  26410363 ataagctctcccaagcagtctcagaagtgcttatgtcagttgataa 26410408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 35374479 - 35374442
Alignment:
Q  146 aaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  35374479 aaagataaaataaagttaaattgttttcatataagcta 35374442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 2364437 - 2364393
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||||||||| || | |||||||||| |||||||||||||||    
T  2364437 ccaaacagtctcacaagtacttatgtcagaagataagttcaaata 2364393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 2487995 - 2487931
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||| || |||||||||||||| || ||||||||||||||||| |  ||||||| | |||||||    
T  2487995 ataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatcca 2487931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 12361262 - 12361341
Alignment:
Q  176 ataagctacttctataag--ctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| |||||||||  ||| | |||| ||||| | || | ||||| |||||||||||||||||||| |||||||||    
T  12361262 ataagctatttctataagatctctctcaaagagtctaacaagtacttatatcagtagataagttcaaataagtcaatcca 12361341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 1418498 - 1418578
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaa 265  Q
    |||||||||||| | ||||||| |||| || |||||||| ||||||||||| ||||||| ||||||||| ||| |||||||    
T  1418498 ttctataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaacaagtcctaa 1418578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 30751598 - 30751666
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||||||| ||||||||||| || || |||||||||||||||||||||| ||||| || ||||||    
T  30751598 ttctataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataagttaatcca 30751666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 29363603 - 29363666
Alignment:
Q  201 aaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtccta 264  Q
    ||||||||||| || ||||||||| |||||||||||||||||| | ||||||| |||| |||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaacagatccta 29363666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 48157111 - 48157053
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||| |||||||||||||| |||||||||  |||||| ||||| |||||||    
T  48157111 ttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctcaaata 48157053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 5620154 - 5620075
Alignment:
Q  174 atataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||| ||||||||||| ||| | |||||||| ||| ||   |||||| |||||||| |||||||||| |||||||||    
T  5620154 atataagttacttctataatctctctcaaacagtatcacaagaacttatgccagtagatgagttcaaataagtcaatcca 5620075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 9210914 - 9210968
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||| |||||||||    
T  9210914 cccaaacagtctcagaaaa-cttatatcagtagataagctcaaataagtcaatcca 9210968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 31002882 - 31002808
Alignment:
Q  175 tataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaa 249  Q
    ||||||||  || |||||||||  ||||||||||||| || |||||||| ||||||||||| |||| || |||||    
T  31002882 tataagctgtttttataagctcatccaaacagtctcacaattgcttatgacagtagataagctcaattaagtcaa 31002808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 36598343 - 36598289
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| | |||||| ||||| || ||||||||||||||| ||||||||||||    
T  36598343 ataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaata 36598289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 43855028 - 43854974
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| |||||| ||| ||  |||||||||||| ||||||||||||||||||    
T  43855028 ataagctctcccaaatagtgtcgcaaatgcttatgttagtagataagttcaaata 43854974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 2727318 - 2727281
Alignment:
Q  216 tgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  2727318 tgcttatgtcagtagataagttcaaataaatcaatcca 2727281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 48157237 - 48157189
Alignment:
Q  134 tttctataatgaaaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||||| ||||||||||||||| | |||||||||| ||||||||||    
T  48157237 tttctataat-aaaagataaaataaagtgaaattgttttaatataagcta 48157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 8427100 - 8427160
Alignment:
Q  193 gctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||| |||||||||||||| || | ||||||| |||||||||| |||||||  ||||||||    
T  8427100 gctcccccaaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatcca 8427160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 22387883 - 22387819
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| |||||||||||||| |  || ||||||||||| |||||||| | || |||||||||    
T  22387883 ataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatcca 22387819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 28691810 - 28691754
Alignment:
Q  202 aacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    |||||||||| |||||||||||| || ||||||  ||||||| ||||||||| ||||    
T  28691810 aacagtctcacaaatgcttatgttagcagataaactcaaataagtcaatccaaacag 28691754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 31751734 - 31751682
Alignment:
Q  201 aaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||||| |||||||||||| | || ||||||| ||||| |||||||||    
T  31751734 aaacagtctcacaaatgcttatgtgactacataagtttaaataagtcaatcca 31751682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 37064199 - 37064147
Alignment:
Q  191 aagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||| | ||||| |||||| || ||||||||||| ||||||||||||||||    
T  37064199 aagctctcacaaaccgtctcacaagtgcttatgtcactagataagttcaaata 37064147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 18628540 - 18628478
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatc 251  Q
    |||||||| |||||||||||||| || || ||||||||||||||||| ||||||| |||||||    
T  18628540 ataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 15173280 - 15173217
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcc 262  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| ||||||||| || |||||    
T  15173280 cccaaacagtctcacaaaa-cttatgtcagtagataagttcaaataagtcaatccaaactggtcc 15173217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 51630074 - 51630112
Alignment:
Q  145 aaaagataaaataaatttaaattgttttgatataagcta 183  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  51630074 aaaagataaaataaagttaaattgttttgatataagcta 51630112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 1017107 - 1017175
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||| ||  ||||||||||||| || || |||||||||||||| || ||||||| |||||||||    
T  1017107 ttctataagttcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagtcaatcca 1017175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 2811551 - 2811615
Alignment:
Q  186 tctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaat 250  Q
    ||||||| ||| | |||||||||||| ||||||||||| ||||||||||  ||||||| ||||||    
T  2811551 tctataatctctctcaaacagtctcataaatgcttatgccagtagataacctcaaataagtcaat 2811615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 46860001 - 46860065
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| | |||||||| ||| || ||||||||| | |||||||||||||||| |||||||||    
T  46860001 ataagctctctcaaacagtttcacaagtgcttatgtgaatagataagttcaaataagtcaatcca 46860065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 50298608 - 50298667
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||||||| || |||||||||||||||||||| | |||||  ||||| |||||||    
T  50298608 ccaaacagtctcacaagtgcttatgtcagtagataagctaaaataaatcaattcatacag 50298667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 54277323 - 54277248
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatc 251  Q
    |||||||  |||| ||||||| | | |||||||||| || || |||||||| |||||||||||||||| |||||||    
T  54277323 ataagctgtttctgtaagctctcgctaacagtctcataagtgtttatgtcactagataagttcaaataagtcaatc 54277248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 2996656 - 2996710
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| | |||||||||||| || ||||||||||| || |||||||||||||    
T  2996656 ataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaata 2996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 1312935 - 1312988
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||| || | ||||||||| |||||||||||| |||||| |||||||||    
T  1312935 caaacagtcacacacatgcttatgccagtagataagtgcaaataagtcaatcca 1312988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 25896854 - 25896931
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| |||||||||||| || ||||||||||| || |||| |||  |||||||||  ||||||| || ||||||    
T  25896854 ataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatcca 25896931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 2236956 - 2236915
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||| |||  ||||||||||||||||||||||||||    
T  2236956 caaacagtctcataaa--cttatgtcagtagataagttcaaata 2236915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 22471357 - 22471401
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagata 233  Q
    ||||| || |||||||||||||| || ||||||||||||||||||    
T  22471357 ataagttctcccaaacagtctcacaagtgcttatgtcagtagata 22471401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 27043788 - 27043748
Alignment:
Q  218 cttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    |||||||||||||||||| ||||||| ||||||||| ||||    
T  27043788 cttatgtcagtagataagctcaaataagtcaatccaaacag 27043748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 41097247 - 41097180
Alignment:
Q  185 ttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||||||| ||| |||||||||| || ||||| || || ||||||||||||||||  ||||||||    
T  41097247 ttctataagctctcccgaacagtctcacaagtgcttttgaca-tagataagttcaaataactcaatcca 41097180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 53943689 - 53943756
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    |||||||| |||||| ||| ||| || |||||||   ||||||||||||||||||  ||||||||||||||    
T  53943689 ataagctctcccaaatagtttcataagtgcttat---agtagataagttcaaataattcaatccatacagg 53943756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 32171551 - 32171604
Alignment:
Q  190 taagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||    
T  32171551 taagctctcccaaccagtctcacaaatgcttatgtcagtaaataagttcaaata 32171604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 32848596 - 32848529
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| ||| |||||||| ||| ||| | |||| ||||||||||||||||||||||| |||||||    
T  32848596 ataagctatttccataagctctccccaacggactcacaaatgcttatgtcagtagataagctcaaata 32848529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 33067241 - 33067307
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccata 255  Q
    |||||||| ||||| |||||| | || ||||||||||||||||||| |||| ||| |||||||||||    
T  33067241 ataagctctcccaatcagtcttacaagtgcttatgtcagtagataaattcacataggtcaatccata 33067307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 8420197 - 8420130
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||| |||||||||||| | | |||||||||| || || |||||||| |||||||| |||||||    
T  8420197 ataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataagctcaaata 8420130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 31624195 - 31624248
Alignment:
Q  118 gcttgtatataagctttttctataatgaaaagataaaataaatttaaattgtttt 172  Q
    |||||| |||||||| |||||||||  |||||||||||||| |||||||||||||    
T  31624195 gcttgtgtataagctatttctataac-aaaagataaaataagtttaaattgtttt 31624248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 33068562 - 33068520
Alignment:
Q  216 tgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    |||||||||||||||||||||||||||| | ||||||| ||||    
T  33068562 tgcttatgtcagtagataagttcaaataagccaatccaaacag 33068520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 2112153 - 2112190
Alignment:
Q  134 tttctataatgaaaagataaaataaatttaaattgttt 171  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  2112153 tttctataataaaaagataaaataaagttaaattgttt 2112190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 3181045 - 3180996
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaa 249  Q
    |||| ||||||| || |||||||||| ||||||||||||||||| |||||    
T  3181045 caaatagtctcacaagtgcttatgtctgtagataagttcaaataagtcaa 3180996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 9093681 - 9093625
Alignment:
Q  126 ataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagcta 183  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||  |||||||||    
T  9093681 ataagctatttctata-tcaaaagataaaataaagttaaattgttttcgtataagcta 9093625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 24333021 - 24333090
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||  ||||||||| | | ||||||||||||||||| ||||  | ||||||||||||||| ||||    
T  24333021 ataagctccaccaaacagtatgacaaatgcttatgtcagtacataaactgaaatatgtcaatccaaacag 24333090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 26177246 - 26177291
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataa 234  Q
    |||||||| |||||||||||| ||||||| ||||||| ||||||||    
T  26177246 ataagctctcccaaacagtctgagaaatgtttatgtcggtagataa 26177291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 24974016 - 24973960
Alignment:
Q  187 ctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||||||||  ||||||| ||| | || |||||||||||| |||||||||||||||    
T  24974016 ctataagctctaccaaacaatcttacaagtgcttatgtcagcagataagttcaaata 24973960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 35070445 - 35070377
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    ||||||||||| || || ||||||||| |||||||||| ||||||| |  |||||| ||| ||||||||    
T  35070445 cccaaacagtcccacaagtgcttatgttagtagataagctcaaataagaaaatccaaacaagtcctaaa 35070377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 41819556 - 41819613
Alignment:
Q  125 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  41819556 tataagctatttctataatggaa-gataaaataaatttaaattgtttttgtataagcta 41819613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 34205348 - 34205393
Alignment:
Q  213 aaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  34205348 aaatgcttatgtcagtaaataagttcaaataagtcaatccaaacag 34205393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 17369316 - 17369356
Alignment:
Q  219 ttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  17369316 ttatgtcagtagataagttcaaataagtcaatccaaacagg 17369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 4855776 - 4855855
Alignment:
Q  187 ctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaaa 266  Q
    |||||||||| | |||||||||||| || || ||| |||| || ||||| ||||||| ||||||| ||||||||| ||||    
T  4855776 ctataagctctctcaaacagtctcacaagtgtttaagtcattatataagctcaaataagtcaatcaatacaggtcttaaa 4855855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 9202885 - 9202819
Alignment:
Q  114 aagtgcttgtatataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagc 181  Q
    |||||||| |||||||||| ||||| ||   ||||||||||||||| |||||||||||| ||||||||    
T  9202885 aagtgcttatatataagctatttctgtagc-aaaagataaaataaagttaaattgttttcatataagc 9202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 28586766 - 28586683
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacagg 259  Q
    |||||||| ||| |||||||| |||||||||| ||| |||||||||||  | ||||  |||||||||  ||||||||| |||||    
T  28586766 ataagctatttccataagctctcccaaacagtttcacaaatgcttatgctattagactagttcaaattagtcaatccaaacagg 28586683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 7674590 - 7674647
Alignment:
Q  123 tatataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagc 181  Q
    |||||||||| ||||||||   ||||||||||||||||||||||||||||  |||||||    
T  7674590 tatataagctatttctatacc-aaaagataaaataaatttaaattgttttcttataagc 7674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 10303879 - 10303941
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatc 251  Q
    |||||||| | |||| | ||||| ||||||||||||| ||||||||| ||||||||| |||||    
T  10303879 ataagctctctcaaataatctcacaaatgcttatgtccgtagataagctcaaatatgccaatc 10303941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 15015927 - 15015980
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    ||||| || |||||||||||||| ||| ||||||||||||||||||| |||||||    
T  15015927 ataagttctcccaaacagtctcacaaa-gcttatgtcagtagataagctcaaata 15015980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 42181084 - 42181003
Alignment:
Q  177 taagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||| ||| |||||||| ||||||  |||||| |||||| ||||  |||| ||||||||||||  ||||||||| ||||    
T  42181084 taagctatttccataagctctcccaaattgtctcacaaatgcatatgctagtaaataagttcaaattagtcaatccaaacag 42181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 31208564 - 31208624
Alignment:
Q  198 cccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatccatacag 258  Q
    ||||||||||||||    ||||||||||||||| | |||||||||| ||||||||| ||||    
T  31208564 cccaaacagtctcacgggtgcttatgtcagtagttcagttcaaataagtcaatccaaacag 31208624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 21872272 - 21872218
Alignment:
Q  199 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    ||||||||||||| || |||||||||||||||||||| ||||||| || ||||||    
T  21872272 ccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatcca 21872218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 42808923 - 42808979
Alignment:
Q  125 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagct 182  Q
    |||||||| |||||||||  ||||||||||||||| |||||||||||| |||||||||    
T  42808923 tataagctgtttctataac-aaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 45590734 - 45590795
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaat 250  Q
    |||||||| |||||||||||||| || ||||||||  |||||||||||||||| | ||||||    
T  45590734 ataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaat 45590795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 16072999 - 16072952
Alignment:
Q  218 cttatgtcagtagataagttcaaatatgtcaatccatacaggtcctaa 265  Q
    ||||||||| |||||||| ||||||| ||||||||| |||||||||||    
T  16072999 cttatgtcattagataagctcaaataagtcaatccaaacaggtcctaa 16072952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 22667497 - 22667540
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||| || |||||||||||||||||||| |||||||    
T  22667497 caaacagtctcacaagtgcttatgtcagtagataagctcaaata 22667540  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 22724136 - 22724179
Alignment:
Q  200 caaacagtctcagaaatgcttatgtcagtagataagttcaaata 243  Q
    |||||||||||| || |||||||||||||||||||| |||||||    
T  22724136 caaacagtctcacaagtgcttatgtcagtagataagctcaaata 22724179  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 32703082 - 32703139
Alignment:
Q  125 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagcta 183  Q
    |||||||| ||||||| || ||||||||||||||| | |||||||||| ||||||||||    
T  32703082 tataagctatttctattat-aaaagataaaataaactcaaattgttttcatataagcta 32703139  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 15304472 - 15304420
Alignment:
Q  126 ataagctttttctataatgaaaagataaaataaatttaaattgttttgatataa 179  Q
    ||||||| |||||||||  ||||||||||||||| |||||||||||| ||||||    
T  15304472 ataagctatttctataac-aaaagataaaataaagttaaattgttttcatataa 15304420  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 42809245 - 42809301
Alignment:
Q  125 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagct 182  Q
    |||||||| |||||||||  ||||||||||||| | |||||||||||| |||||||||    
T  42809245 tataagctatttctataac-aaaagataaaatatagttaaattgttttcatataagct 42809301  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 2081042 - 2081006
Alignment:
Q  217 gcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||||| |||||||||||||||| |||||||||    
T  2081042 gcttatgtcaatagataagttcaaataagtcaatcca 2081006  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 20195020 - 20194956
Alignment:
Q  189 ataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcca 253  Q
    |||||||| | |||||||||||| || ||||||||  || |||||||||||||||  ||||||||    
T  20195020 ataagctctcacaaacagtctcacaactgcttatgcaagaagataagttcaaataaatcaatcca 20194956  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 33965484 - 33965412
Alignment:
Q  180 gctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaatatgtcaatcc 252  Q
    |||| ||| ||||| || || ||||||||||| |  || ||| ||||||||||||| ||||||||||||||||    
T  33965484 gctatttccataaggtctcctaaacagtctcacatgtgtttaagtcagtagataagctcaaatatgtcaatcc 33965412  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 27646 - 27711
Alignment:
Q  176 ataagctacttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaa 241  Q
    |||||||| ||| |||||||| ||||||||||||||||| | | ||||||||||||| || |||||    
T  27646 ataagctatttccataagctctcccaaacagtctcagaagtacatatgtcagtagatcagctcaaa 27711  T

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