View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8558_low_7 (Length: 294)
Name: NF8558_low_7
Description: NF8558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8558_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 35685471 - 35685736
Alignment:
| Q |
9 |
agcagagaaaacttggatcctttgaaaagtttaattttgtggtataaatgcttttttattataactcttttacaatctttctgatttggtttctttgttg |
108 |
Q |
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| T |
35685471 |
agcagagaaaacttggatcctttgaaaagtttaattttgtggtatgaatgcttttttattattactcttttacaatcattctgatttggtttctttgttg |
35685570 |
T |
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| Q |
109 |
ttggagtgtttttgaagctaagttcagggagtatgaaagataaaaatgacnnnnnnnnnnnnnnnnngaatattttaataaaaaggcttacccaaaataa |
208 |
Q |
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| T |
35685571 |
ttggagtgtttttgaagctaagttcagggagtatgaaagataaaaatga--------ttttttttttgaatattttaataaaaaggcttacccaaaataa |
35685662 |
T |
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| Q |
209 |
tgggttgagagagcataagcttaataaagagataaagtgacatcaaaagattaaaatctagatttggaaataag |
282 |
Q |
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| T |
35685663 |
tgggttaagagagcataagcttaataaagggacaaagtgacatcaaaagattaaaatctagatttggaaataag |
35685736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 35680420 - 35680465
Alignment:
| Q |
235 |
aagagataaagtgacatcaaaagattaaaatctagatttggaaata |
280 |
Q |
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| T |
35680420 |
aagagacaaagtgacatcaaaagattaaaacctagatttagaaata |
35680465 |
T |
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